Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUY98_RS13795 Genome accession   NZ_CP089497
Coordinates   2787812..2788207 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3045_IIV_ST8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2782812..2793207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY98_RS13765 - 2784037..2784441 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LUY98_RS13770 - 2784814..2784907 (+) 94 Protein_2676 hypothetical protein -
  LUY98_RS13775 - 2785039..2785272 (+) 234 WP_000384523.1 DUF1146 family protein -
  LUY98_RS13780 murA 2785383..2786648 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUY98_RS13785 fabZ 2786682..2787122 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUY98_RS13790 - 2787178..2787618 (-) 441 WP_000846751.1 YwpF-like family protein -
  LUY98_RS13795 ssb 2787812..2788207 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUY98_RS13800 sceD 2788596..2789291 (+) 696 WP_000752011.1 lytic transglycosylase SceD -
  LUY98_RS13805 tenA 2789679..2790368 (+) 690 WP_000396067.1 thiaminase II -
  LUY98_RS13810 thiD 2790361..2791191 (+) 831 WP_000594949.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUY98_RS13815 thiM 2791175..2791966 (+) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  LUY98_RS13820 thiE 2791968..2792609 (+) 642 WP_000483159.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637584 LUY98_RS13795 WP_000932694.1 2787812..2788207(+) (ssb) [Staphylococcus aureus strain 3045_IIV_ST8]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637584 LUY98_RS13795 WP_000932694.1 2787812..2788207(+) (ssb) [Staphylococcus aureus strain 3045_IIV_ST8]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATACTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992