Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUY98_RS07575 Genome accession   NZ_CP089497
Coordinates   1513754..1514323 (-) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3045_IIV_ST8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1508754..1519323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY98_RS07535 - 1509228..1509836 (-) 609 WP_000020295.1 class I SAM-dependent methyltransferase -
  LUY98_RS07540 rplL 1510011..1510379 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LUY98_RS07545 rplJ 1510422..1510922 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  LUY98_RS07550 rplA 1511194..1511886 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LUY98_RS07555 rplK 1512094..1512516 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LUY98_RS07560 nusG 1512697..1513245 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LUY98_RS07565 secE 1513258..1513440 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LUY98_RS07570 rpmG 1513496..1513639 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LUY98_RS07575 sigH 1513754..1514323 (-) 570 WP_000872878.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUY98_RS07580 - 1514404..1514928 (-) 525 WP_000664731.1 NYN domain-containing protein -
  LUY98_RS07585 rlmB 1514928..1515674 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUY98_RS07590 - 1515682..1516086 (-) 405 WP_000370179.1 Mini-ribonuclease 3 -
  LUY98_RS07595 cysS 1516079..1517479 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  LUY98_RS07600 cysE 1517463..1518110 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=637572 LUY98_RS07575 WP_000872878.1 1513754..1514323(-) (sigH) [Staphylococcus aureus strain 3045_IIV_ST8]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637572 LUY98_RS07575 WP_000872878.1 1513754..1514323(-) (sigH) [Staphylococcus aureus strain 3045_IIV_ST8]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979