Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUY91_RS14515 Genome accession   NZ_CP089495
Coordinates   2873314..2873709 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E1202_II_ST496     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2868314..2878709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY91_RS14485 - 2869572..2869976 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LUY91_RS14490 - 2870314..2870406 (+) 93 WP_001790611.1 hypothetical protein -
  LUY91_RS14495 - 2870538..2870771 (+) 234 WP_000384523.1 DUF1146 family protein -
  LUY91_RS14500 murA 2870882..2872147 (+) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUY91_RS14505 fabZ 2872181..2872621 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUY91_RS14510 - 2872680..2873120 (-) 441 WP_000846746.1 YwpF-like family protein -
  LUY91_RS14515 ssb 2873314..2873709 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUY91_RS14520 sceD 2874098..2874793 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  LUY91_RS14525 tenA 2875179..2875868 (+) 690 WP_000396077.1 thiaminase II -
  LUY91_RS14530 thiD 2875861..2876691 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUY91_RS14535 thiM 2876675..2877466 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  LUY91_RS14540 thiE 2877468..2878109 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637541 LUY91_RS14515 WP_000932694.1 2873314..2873709(+) (ssb) [Staphylococcus aureus strain E1202_II_ST496]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637541 LUY91_RS14515 WP_000932694.1 2873314..2873709(+) (ssb) [Staphylococcus aureus strain E1202_II_ST496]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992