Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUY91_RS07850 Genome accession   NZ_CP089495
Coordinates   1542020..1542589 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E1202_II_ST496     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1537020..1547589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY91_RS07810 - 1537494..1538102 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  LUY91_RS07815 rplL 1538277..1538645 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LUY91_RS07820 rplJ 1538688..1539188 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  LUY91_RS07825 rplA 1539460..1540152 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LUY91_RS07830 rplK 1540360..1540782 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LUY91_RS07835 nusG 1540963..1541511 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LUY91_RS07840 secE 1541524..1541706 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  LUY91_RS07845 rpmG 1541762..1541905 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LUY91_RS07850 sigH 1542020..1542589 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUY91_RS07855 - 1542670..1543194 (-) 525 WP_000664738.1 NYN domain-containing protein -
  LUY91_RS07860 rlmB 1543194..1543940 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUY91_RS07865 - 1543948..1544352 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LUY91_RS07870 cysS 1544345..1545745 (-) 1401 WP_000631964.1 cysteine--tRNA ligase -
  LUY91_RS07875 cysE 1545729..1546376 (-) 648 WP_001838365.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=637528 LUY91_RS07850 WP_000872873.1 1542020..1542589(-) (sigH) [Staphylococcus aureus strain E1202_II_ST496]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637528 LUY91_RS07850 WP_000872873.1 1542020..1542589(-) (sigH) [Staphylococcus aureus strain E1202_II_ST496]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984