Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   LUY91_RS02855 Genome accession   NZ_CP089495
Coordinates   510418..510870 (+) Length   150 a.a.
NCBI ID   WP_111724816.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E1202_II_ST496     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 510948..512120 510418..510870 flank 78


Gene organization within MGE regions


Location: 510418..512120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY91_RS02855 comGF 510418..510870 (+) 453 WP_111724816.1 competence type IV pilus minor pilin ComGF Machinery gene
  LUY91_RS02860 - 510948..512120 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17635.04 Da        Isoelectric Point: 10.0697

>NTDB_id=637517 LUY91_RS02855 WP_111724816.1 510418..510870(+) (comGF) [Staphylococcus aureus strain E1202_II_ST496]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMFISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKDKVRIIV

Nucleotide


Download         Length: 453 bp        

>NTDB_id=637517 LUY91_RS02855 WP_111724816.1 510418..510870(+) (comGF) [Staphylococcus aureus strain E1202_II_ST496]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGTTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAAGATAAAGTCCGTATAATTGTGTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(66-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

95.333

100

0.953
  comGF Staphylococcus aureus N315

92

100

0.92