Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUZ06_RS14035 Genome accession   NZ_CP089493
Coordinates   2814580..2814975 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0308_IA_ST247     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2809580..2819975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ06_RS14005 - 2810248..2810340 (+) 93 WP_001790611.1 hypothetical protein -
  LUZ06_RS14010 - 2810403..2811575 (-) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  LUZ06_RS14015 - 2811804..2812037 (+) 234 WP_000384523.1 DUF1146 family protein -
  LUZ06_RS14020 murA 2812148..2813413 (+) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUZ06_RS14025 fabZ 2813447..2813887 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUZ06_RS14030 - 2813946..2814386 (-) 441 WP_000846746.1 YwpF-like family protein -
  LUZ06_RS14035 ssb 2814580..2814975 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUZ06_RS14040 sceD 2815364..2816059 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  LUZ06_RS14045 tenA 2816445..2817134 (+) 690 WP_000396077.1 thiaminase II -
  LUZ06_RS14050 thiD 2817127..2817957 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUZ06_RS14055 thiM 2817941..2818732 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  LUZ06_RS14060 thiE 2818734..2819375 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637498 LUZ06_RS14035 WP_000932694.1 2814580..2814975(+) (ssb) [Staphylococcus aureus strain 0308_IA_ST247]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637498 LUZ06_RS14035 WP_000932694.1 2814580..2814975(+) (ssb) [Staphylococcus aureus strain 0308_IA_ST247]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992