Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N8I87_RS21695 Genome accession   NZ_CP106798
Coordinates   4690529..4691128 (+) Length   199 a.a.
NCBI ID   WP_235460829.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS 15-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4685529..4696128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I87_RS21680 (N8I87_21680) - 4686821..4688323 (+) 1503 WP_411577266.1 serine/threonine-protein kinase -
  N8I87_RS44415 - 4688317..4688868 (+) 552 WP_411577267.1 hypothetical protein -
  N8I87_RS21685 (N8I87_21685) - 4689127..4689879 (-) 753 WP_263210910.1 SLATT domain-containing protein -
  N8I87_RS21690 (N8I87_21690) - 4690129..4690473 (+) 345 WP_263216581.1 YbaB/EbfC family nucleoid-associated protein -
  N8I87_RS21695 (N8I87_21695) recR 4690529..4691128 (+) 600 WP_235460829.1 recombination mediator RecR Machinery gene
  N8I87_RS21700 (N8I87_21700) - 4691121..4691780 (+) 660 WP_263210912.1 DUF5063 domain-containing protein -
  N8I87_RS21705 (N8I87_21705) - 4691949..4693226 (+) 1278 WP_263210913.1 aspartate kinase -
  N8I87_RS21710 (N8I87_21710) - 4693226..4694293 (+) 1068 WP_263210914.1 aspartate-semialdehyde dehydrogenase -
  N8I87_RS21715 (N8I87_21715) - 4694746..4695420 (+) 675 WP_411577268.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21762.11 Da        Isoelectric Point: 4.9909

>NTDB_id=637489 N8I87_RS21695 WP_235460829.1 4690529..4691128(+) (recR) [Streptomyces sp. HUAS 15-9]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALLEVKAKVRFCATCGNVAQEELCAVCRDPRRDQSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=637489 N8I87_RS21695 WP_235460829.1 4690529..4691128(+) (recR) [Streptomyces sp. HUAS 15-9]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAGCTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCGACGGACGTACGGCGCCTGGCCCAGGCGCTCCTGGAGGTGAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTCGCGCAGGAGGAGCTGTGCGCGGTCTGCCGCGACCCCCGCCGCGACCAGTCGGTC
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGCACCCGTGAGTTCCGGGGCCGCTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTGGGCCCCGACGATCTCCGGATACGGGAACTCCTGGCCCGCCTGGCCGACGGAA
CGGTCACCGAACTGATCCTGGCCACGGACCCCAATCTCGAAGGCGAGGCGACGGCCACGTACCTCGCCCGCATGATCAAA
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACGCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.67

97.487

0.543
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462