Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUZ06_RS07805 Genome accession   NZ_CP089493
Coordinates   1550658..1551227 (-) Length   189 a.a.
NCBI ID   WP_061642116.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0308_IA_ST247     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1545658..1556227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ06_RS07765 - 1546132..1546740 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  LUZ06_RS07770 rplL 1546915..1547283 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LUZ06_RS07775 rplJ 1547326..1547826 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  LUZ06_RS07780 rplA 1548098..1548790 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LUZ06_RS07785 rplK 1548998..1549420 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LUZ06_RS07790 nusG 1549601..1550149 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LUZ06_RS07795 secE 1550162..1550344 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  LUZ06_RS07800 rpmG 1550400..1550543 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LUZ06_RS07805 sigH 1550658..1551227 (-) 570 WP_061642116.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUZ06_RS07810 - 1551308..1551832 (-) 525 WP_000664738.1 NYN domain-containing protein -
  LUZ06_RS07815 rlmB 1551832..1552578 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUZ06_RS07820 - 1552586..1552990 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LUZ06_RS07825 cysS 1552983..1554383 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  LUZ06_RS07830 cysE 1554367..1555014 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22970.87 Da        Isoelectric Point: 9.5313

>NTDB_id=637484 LUZ06_RS07805 WP_061642116.1 1550658..1551227(-) (sigH) [Staphylococcus aureus strain 0308_IA_ST247]
MKYDLTTQDSTIKRNNAINDKGFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637484 LUZ06_RS07805 WP_061642116.1 1550658..1551227(-) (sigH) [Staphylococcus aureus strain 0308_IA_ST247]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGGCTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979