Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   LUZ06_RS04275 Genome accession   NZ_CP089493
Coordinates   847803..848873 (-) Length   356 a.a.
NCBI ID   WP_000775708.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0308_IA_ST247     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 842803..853873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ06_RS04235 gcvPA 842980..844326 (-) 1347 WP_061732973.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  LUZ06_RS04240 gcvT 844346..845437 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  LUZ06_RS04245 - 845596..846120 (-) 525 WP_001015117.1 shikimate kinase -
  LUZ06_RS04250 - 846110..846256 (-) 147 WP_001789879.1 hypothetical protein -
  LUZ06_RS04255 comGF 846353..846850 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  LUZ06_RS04260 comGE 846768..847067 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  LUZ06_RS04265 comGD 847054..847500 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  LUZ06_RS04270 comGC 847478..847789 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LUZ06_RS04275 comGB 847803..848873 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  LUZ06_RS04280 comGA 848845..849819 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  LUZ06_RS04285 - 849870..850493 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LUZ06_RS04290 - 850490..850819 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LUZ06_RS04295 - 850819..851805 (-) 987 WP_000161314.1 ROK family glucokinase -
  LUZ06_RS04300 - 851802..852005 (-) 204 WP_000087561.1 YqgQ family protein -
  LUZ06_RS04305 - 851986..853449 (-) 1464 WP_061393848.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41364.77 Da        Isoelectric Point: 10.0092

>NTDB_id=637472 LUZ06_RS04275 WP_000775708.1 847803..848873(-) (comGB) [Staphylococcus aureus strain 0308_IA_ST247]
MKLQCINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=637472 LUZ06_RS04275 WP_000775708.1 847803..848873(-) (comGB) [Staphylococcus aureus strain 0308_IA_ST247]
GTGAAACTACAATGCATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.719

100

0.997
  comGB Staphylococcus aureus N315

99.719

100

0.997