Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   N8I87_RS12935 Genome accession   NZ_CP106798
Coordinates   2810608..2812590 (+) Length   660 a.a.
NCBI ID   WP_263208451.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS 15-9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2805608..2817590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I87_RS12900 (N8I87_12900) - 2805785..2806039 (+) 255 WP_263208444.1 Txe/YoeB family addiction module toxin -
  N8I87_RS12920 (N8I87_12920) - 2806865..2807170 (+) 306 WP_263208446.1 YtxH domain-containing protein -
  N8I87_RS12925 (N8I87_12925) - 2807263..2808714 (+) 1452 WP_263208448.1 FGGY family carbohydrate kinase -
  N8I87_RS12930 (N8I87_12930) rcrP 2808875..2810608 (+) 1734 WP_263208449.1 ABC transporter ATP-binding protein Regulator
  N8I87_RS12935 (N8I87_12935) rcrQ 2810608..2812590 (+) 1983 WP_263208451.1 ABC transporter ATP-binding protein Regulator
  N8I87_RS12940 (N8I87_12940) - 2812640..2813932 (-) 1293 WP_263208453.1 RNA polymerase sigma factor -
  N8I87_RS12945 (N8I87_12945) dnaG 2814037..2815947 (-) 1911 WP_263208455.1 DNA primase -
  N8I87_RS12950 (N8I87_12950) - 2816009..2817274 (-) 1266 WP_263208457.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 71185.80 Da        Isoelectric Point: 6.2691

>NTDB_id=637469 N8I87_RS12935 WP_263208451.1 2810608..2812590(+) (rcrQ) [Streptomyces sp. HUAS 15-9]
MAGPMGRMMAGGGPDQRSMDFKGSGKRLIARFKPERLTIYALLLCVVVSVTLSVIGPKILGRATDLVFAGIVGRQMPAGA
TKEQVLDSMREGGQGSVADMLQSTDFTPGKGIDFDAVGNVLLFALGTFLVAGLLMAVATRLVNRAVNRTMYRMREDVQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLVMMFWVSWLLALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGKLNAHIEEMYTGHTLVKVFGRQQESAQQFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVPGERPAEATGRVALE
HVSFRYEPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIRRMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGAGVEGGARSALGQGGGGRRAGEVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQL
ITIARAFLSDPVILVLDEATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAA
DGAYARLYKAQFAQAVAEVD

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=637469 N8I87_RS12935 WP_263208451.1 2810608..2812590(+) (rcrQ) [Streptomyces sp. HUAS 15-9]
ATGGCAGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGACCAGCGCTCGATGGACTTCAAGGGGTCGGGCAAACG
GCTCATCGCCCGGTTCAAGCCCGAACGGCTGACGATCTACGCGCTGCTGCTGTGCGTCGTCGTCAGCGTGACCCTGAGCG
TGATCGGCCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGCCGGCAGATGCCGGCCGGGGCC
ACCAAGGAGCAGGTCCTCGACTCCATGCGCGAGGGGGGCCAGGGCTCCGTCGCGGACATGCTGCAGAGCACCGACTTCAC
CCCCGGCAAGGGCATCGACTTCGACGCCGTCGGGAACGTGCTGCTGTTCGCGCTCGGCACCTTCCTCGTCGCCGGTCTGC
TGATGGCGGTGGCGACGCGGCTGGTCAACCGGGCGGTGAACCGCACGATGTACCGGATGCGCGAGGACGTGCAGGCGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTCTCCCGGGCCACCAACGACATCGACAA
CATCGGCCAGACGCTCCAGCAGTCGATGGGCCAGCTCATCAACTCGGTGCTCACCATCATCGGTGTGCTGGTGATGATGT
TCTGGGTGTCGTGGCTGCTGGCCCTGGTCGCGCTGGTCACCGTGCCGCTGTCGTTCGTCGTGGCGACCCGGGTCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGTCGGCAGCAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTGATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTCGTCGCC
GTGGTCGGCGGTCTGCGGGTGGCGTCCGGCGCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACCCAGGTCGCCTCGATGGCCAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCGAAC
TCCTGGACGCGGAGGAGCAGGAGGCGGACCCGGTACCGGGCGAGCGGCCGGCGGAAGCGACCGGGCGCGTGGCGCTGGAG
CATGTGTCGTTCCGGTACGAGCCCGAGAAGCCGCTGATCGAGGACCTGTCGCTGAAGGTGGAGCCGGGACACACGGTCGC
GATCGTGGGTCCGACGGGCGCGGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGACGTGTCCGGCGGGCGGA
TCACCCTCGACGGCGTCGACATCCGCAGGATGTCCCGTGACGAACTCCGGGCCGGAATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCTGGAGTGGAAGGGGGTGCGCGCAGCGCACTCGGTCA
GGGTGGTGGCGGGCGACGGGCGGGCGAGGTCACCCGGGGCGAGATCGAGGAGGCGGCGCGCGCGGCCCACGCCGACCGTT
TCATCCGTACCCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGCACGGGTGTCAGCGCCGGTGAGAAGCAGCTC
ATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAGGCGACCAGCTCCGTCGACACCCGTAC
CGAGGTGCTGATCCAGAAGGCGATGGCCAAGCTGGCGCACGGGCGGACGTCGTTCGTCATCGCGCACCGGCTCTCGACGA
TCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGCTCGATCGTCGAACAGGGCGCGCACGCGGAGCTGCTGGCCGCG
GACGGTGCCTATGCGCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTCGCGGAGGTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-581)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.375

96.97

0.382