Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   N8I87_RS12930 Genome accession   NZ_CP106798
Coordinates   2808875..2810608 (+) Length   577 a.a.
NCBI ID   WP_263208449.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS 15-9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2803875..2815608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I87_RS44000 - 2804759..2805241 (-) 483 WP_317633462.1 hypothetical protein -
  N8I87_RS12890 (N8I87_12890) - 2805268..2805405 (+) 138 WP_263208441.1 hypothetical protein -
  N8I87_RS12895 (N8I87_12895) - 2805525..2805788 (+) 264 WP_142164117.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  N8I87_RS12900 (N8I87_12900) - 2805785..2806039 (+) 255 WP_263208444.1 Txe/YoeB family addiction module toxin -
  N8I87_RS12920 (N8I87_12920) - 2806865..2807170 (+) 306 WP_263208446.1 YtxH domain-containing protein -
  N8I87_RS12925 (N8I87_12925) - 2807263..2808714 (+) 1452 WP_263208448.1 FGGY family carbohydrate kinase -
  N8I87_RS12930 (N8I87_12930) rcrP 2808875..2810608 (+) 1734 WP_263208449.1 ABC transporter ATP-binding protein Regulator
  N8I87_RS12935 (N8I87_12935) rcrQ 2810608..2812590 (+) 1983 WP_263208451.1 ABC transporter ATP-binding protein Regulator
  N8I87_RS12940 (N8I87_12940) - 2812640..2813932 (-) 1293 WP_263208453.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62447.74 Da        Isoelectric Point: 5.7411

>NTDB_id=637468 N8I87_RS12930 WP_263208449.1 2808875..2810608(+) (rcrP) [Streptomyces sp. HUAS 15-9]
MLIRLLRTYLRPYKKPIAILVLLQFLQTCATLYLPTLNADIIDQGVVKGDTGYILSFGVLMIGISLAQVVCNIGAVYYGA
KTASALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGICVTLIVRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQGRFGKANADLTDMQLATGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMAIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PAAPVTELRRHGHLEIRGAGFRYPGAEEPVLKSVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVS
GLDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAEDFVRQLEGGLNAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALARETAEATVVIVAQRVATIRDADRIVVLDEGLVVGTGRHHELMACN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=637468 N8I87_RS12930 WP_263208449.1 2808875..2810608(+) (rcrP) [Streptomyces sp. HUAS 15-9]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAAGAAACCCATCGCCATCCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACCCTGAACGCGGACATCATCGACCAGGGTGTCGTGAAGGGTGACACCGGCTACA
TCCTGTCCTTCGGTGTCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCG
AAGACCGCGTCGGCGCTCGGCCGGGACGTCCGCGCCGCCGTCTTCGACAGGGTGCAGTCCTTCTCCGCACGTGAGGTCGG
TCACTTCGGCGCCCCCTCCCTCATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGCATCGTCCTGGCCCTCGGTCTGGACGTTCCGCTGTCCGGGGTC
CTGGTGGCGGTCGTACCGGTACTGGGCATCTGTGTGACGCTGATCGTGCGCCGGCTGCGCCCGCTGTTCCGGTCCATGCA
GGTACGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGTGACG
AGTACGAGCAGGGCCGCTTCGGGAAGGCGAACGCCGATCTCACCGACATGCAGCTGGCGACCGGCCGGATGCTCGCGCTG
ATGTTCCCGATCGTGATGACGGTGGTGAACCTGTCGTCGATCGCCGTCGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGGCGATCGGCGATCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGGATCCAGGAGGTCCTGGAGACCGAGTCCAGCGTGGTGCCG
CCGGCCGCTCCGGTCACCGAGCTGCGCCGACACGGCCATCTGGAGATCCGCGGGGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGTCCGTCGACCTGGTGGCCCGGCCGGGTGAGACGACCGCCGTGATCGGCTCCACCGGCAGCGGCA
AGTCGACCCTGCTCGGACTGGTCCCGCGGCTGTTCGACGCCACCGACGGCGAGGTGCTCGTGGACGGCGTCGACGTGTCG
GGCCTCGACCCGGTGCTGCTCGCGAAGACCGTCGGGCTCGTCCCGCAGAAGCCGTACCTGTTCGCCGGCACGGTGGCCAC
CAATCTGCGCTACGGAAATCCGGACGCCACCGACGAGGAGCTCTGGCACGCGCTGGAGGTCGCGCAGGCCGAGGACTTCG
TGCGGCAGCTGGAGGGCGGACTGAACGCCCCCGTCTCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGCCAGCGCCTG
GCCATCGCCCGCACGCTCGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCCCTGCGCACCGCGCTCGCCCGGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCCCAGCGCGTGGCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTGGACGAGGGGCTGGTCGTCGGCACCGGCCGGCACCACGAGCTCATGGCCTGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.554

100

0.388