Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LUZ02_RS13065 Genome accession   NZ_CP089491
Coordinates   2671410..2672096 (+) Length   228 a.a.
NCBI ID   WP_407568351.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0242_IV_ST30     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2666410..2677096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ02_RS13030 yqeH 2666937..2668037 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  LUZ02_RS13035 aroE 2668051..2668857 (+) 807 WP_000666749.1 shikimate dehydrogenase -
  LUZ02_RS13040 yhbY 2668861..2669151 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  LUZ02_RS13045 nadD 2669154..2669723 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LUZ02_RS13050 yqeK 2669713..2670297 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LUZ02_RS13055 rsfS 2670298..2670651 (+) 354 WP_001088022.1 ribosome silencing factor -
  LUZ02_RS13060 - 2670654..2671370 (+) 717 WP_000084824.1 class I SAM-dependent methyltransferase -
  LUZ02_RS13065 comEA 2671410..2672096 (+) 687 WP_407568351.1 helix-hairpin-helix domain-containing protein Machinery gene
  LUZ02_RS13070 - 2672188..2672649 (+) 462 WP_000439693.1 ComE operon protein 2 -
  LUZ02_RS13075 comEC 2672654..2674855 (+) 2202 WP_050956957.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LUZ02_RS13080 holA 2674912..2675886 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  LUZ02_RS13085 rpsT 2675931..2676182 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25797.57 Da        Isoelectric Point: 9.6753

>NTDB_id=637447 LUZ02_RS13065 WP_407568351.1 2671410..2672096(+) (comEA) [Staphylococcus aureus strain 0242_IV_ST30]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKPYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=637447 LUZ02_RS13065 WP_407568351.1 2671410..2672096(+) (comEA) [Staphylococcus aureus strain 0242_IV_ST30]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAACCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.684

100

0.987
  comEA Staphylococcus aureus N315

97.807

100

0.978