Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUZ02_RS04740 Genome accession   NZ_CP089491
Coordinates   995360..995929 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0242_IV_ST30     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 990360..1000929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ02_RS04700 - 990834..991442 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  LUZ02_RS04705 rplL 991617..991985 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LUZ02_RS04710 rplJ 992028..992528 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  LUZ02_RS04715 rplA 992800..993492 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LUZ02_RS04720 rplK 993700..994122 (-) 423 WP_001085795.1 50S ribosomal protein L11 -
  LUZ02_RS04725 nusG 994303..994851 (-) 549 WP_001288298.1 transcription termination/antitermination protein NusG -
  LUZ02_RS04730 secE 994864..995046 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LUZ02_RS04735 rpmG 995102..995245 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LUZ02_RS04740 sigH 995360..995929 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUZ02_RS04745 - 996010..996534 (-) 525 WP_000664732.1 NYN domain-containing protein -
  LUZ02_RS04750 rlmB 996534..997280 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUZ02_RS04755 - 997288..997692 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LUZ02_RS04760 cysS 997685..999085 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  LUZ02_RS04765 cysE 999069..999716 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=637424 LUZ02_RS04740 WP_000872873.1 995360..995929(-) (sigH) [Staphylococcus aureus strain 0242_IV_ST30]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637424 LUZ02_RS04740 WP_000872873.1 995360..995929(-) (sigH) [Staphylococcus aureus strain 0242_IV_ST30]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984