Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUZ08_RS14125 Genome accession   NZ_CP089489
Coordinates   2826583..2826978 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E1174_IV_ST22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2821583..2831978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ08_RS14095 - 2822841..2823245 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LUZ08_RS14100 - 2823583..2823675 (+) 93 WP_001790611.1 hypothetical protein -
  LUZ08_RS14105 - 2823807..2824040 (+) 234 WP_000384523.1 DUF1146 family protein -
  LUZ08_RS14110 murA 2824151..2825416 (+) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUZ08_RS14115 fabZ 2825450..2825890 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUZ08_RS14120 - 2825949..2826389 (-) 441 WP_000846746.1 YwpF-like family protein -
  LUZ08_RS14125 ssb 2826583..2826978 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUZ08_RS14130 sceD 2827367..2828062 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  LUZ08_RS14135 tenA 2828448..2829137 (+) 690 WP_000396077.1 thiaminase II -
  LUZ08_RS14140 thiD 2829130..2829960 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUZ08_RS14145 thiM 2829944..2830735 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  LUZ08_RS14150 thiE 2830737..2831378 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637411 LUZ08_RS14125 WP_000932694.1 2826583..2826978(+) (ssb) [Staphylococcus aureus strain E1174_IV_ST22]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637411 LUZ08_RS14125 WP_000932694.1 2826583..2826978(+) (ssb) [Staphylococcus aureus strain E1174_IV_ST22]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992