Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUZ08_RS07825 Genome accession   NZ_CP089489
Coordinates   1536184..1536753 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E1174_IV_ST22     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531184..1541753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ08_RS07785 - 1531658..1532266 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  LUZ08_RS07790 rplL 1532441..1532809 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LUZ08_RS07795 rplJ 1532852..1533352 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  LUZ08_RS07800 rplA 1533624..1534316 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LUZ08_RS07805 rplK 1534524..1534946 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LUZ08_RS07810 nusG 1535127..1535675 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LUZ08_RS07815 secE 1535688..1535870 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  LUZ08_RS07820 rpmG 1535926..1536069 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LUZ08_RS07825 sigH 1536184..1536753 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUZ08_RS07830 - 1536834..1537358 (-) 525 WP_000664738.1 NYN domain-containing protein -
  LUZ08_RS07835 rlmB 1537358..1538104 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUZ08_RS07840 - 1538112..1538516 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LUZ08_RS07845 cysS 1538509..1539909 (-) 1401 WP_000631964.1 cysteine--tRNA ligase -
  LUZ08_RS07850 cysE 1539893..1540540 (-) 648 WP_001838365.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=637399 LUZ08_RS07825 WP_000872873.1 1536184..1536753(-) (sigH) [Staphylococcus aureus strain E1174_IV_ST22]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637399 LUZ08_RS07825 WP_000872873.1 1536184..1536753(-) (sigH) [Staphylococcus aureus strain E1174_IV_ST22]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984