Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUZ03_RS07810 Genome accession   NZ_CP089487
Coordinates   1542298..1542867 (-) Length   189 a.a.
NCBI ID   WP_061642116.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0220_II_ST5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1537298..1547867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ03_RS07770 - 1537772..1538380 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  LUZ03_RS07775 rplL 1538555..1538923 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LUZ03_RS07780 rplJ 1538966..1539466 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  LUZ03_RS07785 rplA 1539738..1540430 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LUZ03_RS07790 rplK 1540638..1541060 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LUZ03_RS07795 nusG 1541241..1541789 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LUZ03_RS07800 secE 1541802..1541984 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  LUZ03_RS07805 rpmG 1542040..1542183 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LUZ03_RS07810 sigH 1542298..1542867 (-) 570 WP_061642116.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUZ03_RS07815 - 1542948..1543472 (-) 525 WP_000664738.1 NYN domain-containing protein -
  LUZ03_RS07820 rlmB 1543472..1544218 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUZ03_RS07825 - 1544226..1544630 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LUZ03_RS07830 cysS 1544623..1546023 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  LUZ03_RS07835 cysE 1546007..1546654 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22970.87 Da        Isoelectric Point: 9.5313

>NTDB_id=637354 LUZ03_RS07810 WP_061642116.1 1542298..1542867(-) (sigH) [Staphylococcus aureus strain 0220_II_ST5]
MKYDLTTQDSTIKRNNAINDKGFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637354 LUZ03_RS07810 WP_061642116.1 1542298..1542867(-) (sigH) [Staphylococcus aureus strain 0220_II_ST5]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGGCTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979