Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUY94_RS13930 Genome accession   NZ_CP089485
Coordinates   2796580..2796975 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E1139_IV_ST45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2791580..2801975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY94_RS13900 - 2792838..2793242 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LUY94_RS13905 - 2793580..2793672 (+) 93 WP_001790611.1 hypothetical protein -
  LUY94_RS13910 - 2793804..2794037 (+) 234 WP_000384523.1 DUF1146 family protein -
  LUY94_RS13915 murA 2794148..2795413 (+) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUY94_RS13920 fabZ 2795447..2795887 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUY94_RS13925 - 2795946..2796386 (-) 441 WP_000846746.1 YwpF-like family protein -
  LUY94_RS13930 ssb 2796580..2796975 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUY94_RS13935 sceD 2797364..2798059 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  LUY94_RS13940 tenA 2798445..2799134 (+) 690 WP_000396077.1 thiaminase II -
  LUY94_RS13945 thiD 2799127..2799957 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUY94_RS13950 thiM 2799941..2800732 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  LUY94_RS13955 thiE 2800734..2801375 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637324 LUY94_RS13930 WP_000932694.1 2796580..2796975(+) (ssb) [Staphylococcus aureus strain E1139_IV_ST45]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637324 LUY94_RS13930 WP_000932694.1 2796580..2796975(+) (ssb) [Staphylococcus aureus strain E1139_IV_ST45]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992