Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUY94_RS07800 Genome accession   NZ_CP089485
Coordinates   1547450..1548019 (-) Length   189 a.a.
NCBI ID   WP_061642116.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E1139_IV_ST45     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1542450..1553019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY94_RS07765 rplL 1543707..1544075 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LUY94_RS07770 rplJ 1544118..1544618 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  LUY94_RS07775 rplA 1544890..1545582 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LUY94_RS07780 rplK 1545790..1546212 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LUY94_RS07785 nusG 1546393..1546941 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LUY94_RS07790 secE 1546954..1547136 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  LUY94_RS07795 rpmG 1547192..1547335 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LUY94_RS07800 sigH 1547450..1548019 (-) 570 WP_061642116.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUY94_RS07805 - 1548100..1548624 (-) 525 WP_000664738.1 NYN domain-containing protein -
  LUY94_RS07810 rlmB 1548624..1549370 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUY94_RS07815 - 1549378..1549782 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LUY94_RS07820 cysS 1549775..1551175 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  LUY94_RS07825 cysE 1551159..1551806 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22970.87 Da        Isoelectric Point: 9.5313

>NTDB_id=637310 LUY94_RS07800 WP_061642116.1 1547450..1548019(-) (sigH) [Staphylococcus aureus strain E1139_IV_ST45]
MKYDLTTQDSTIKRNNAINDKGFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637310 LUY94_RS07800 WP_061642116.1 1547450..1548019(-) (sigH) [Staphylococcus aureus strain E1139_IV_ST45]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGGCTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979