Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LUY94_RS02340 Genome accession   NZ_CP089485
Coordinates   435411..436097 (+) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain E1139_IV_ST45     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430411..441097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY94_RS02305 yqeH 430938..432038 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  LUY94_RS02310 aroE 432052..432858 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  LUY94_RS02315 yhbY 432862..433152 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  LUY94_RS02320 nadD 433155..433724 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LUY94_RS02325 yqeK 433714..434298 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LUY94_RS02330 rsfS 434299..434652 (+) 354 WP_001088022.1 ribosome silencing factor -
  LUY94_RS02335 - 434655..435371 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  LUY94_RS02340 comEA 435411..436097 (+) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  LUY94_RS02345 - 436189..436650 (+) 462 WP_000439693.1 ComE operon protein 2 -
  LUY94_RS02350 comEC 436655..438856 (+) 2202 WP_001566051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LUY94_RS02355 holA 438913..439887 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  LUY94_RS02360 rpsT 439932..440183 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=637291 LUY94_RS02340 WP_001792568.1 435411..436097(+) (comEA) [Staphylococcus aureus strain E1139_IV_ST45]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=637291 LUY94_RS02340 WP_001792568.1 435411..436097(+) (comEA) [Staphylococcus aureus strain E1139_IV_ST45]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969