Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUY97_RS08140 Genome accession   NZ_CP089483
Coordinates   1594976..1595545 (-) Length   189 a.a.
NCBI ID   WP_061642116.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0104_III_ST239     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1589976..1600545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY97_RS08105 rplL 1591233..1591601 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LUY97_RS08110 rplJ 1591644..1592144 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  LUY97_RS08115 rplA 1592416..1593108 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LUY97_RS08120 rplK 1593316..1593738 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LUY97_RS08125 nusG 1593919..1594467 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LUY97_RS08130 secE 1594480..1594662 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  LUY97_RS08135 rpmG 1594718..1594861 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LUY97_RS08140 sigH 1594976..1595545 (-) 570 WP_061642116.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUY97_RS08145 - 1595626..1596150 (-) 525 WP_000664738.1 NYN domain-containing protein -
  LUY97_RS08150 rlmB 1596150..1596896 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUY97_RS08155 - 1596904..1597308 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LUY97_RS08160 cysS 1597301..1598701 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  LUY97_RS08165 cysE 1598685..1599332 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22970.87 Da        Isoelectric Point: 9.5313

>NTDB_id=637266 LUY97_RS08140 WP_061642116.1 1594976..1595545(-) (sigH) [Staphylococcus aureus strain 0104_III_ST239]
MKYDLTTQDSTIKRNNAINDKGFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637266 LUY97_RS08140 WP_061642116.1 1594976..1595545(-) (sigH) [Staphylococcus aureus strain 0104_III_ST239]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGGCTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979