Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LUY97_RS02345 Genome accession   NZ_CP089483
Coordinates   436154..436840 (+) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain 0104_III_ST239     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431154..441840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY97_RS02310 yqeH 431681..432781 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  LUY97_RS02315 aroE 432795..433601 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  LUY97_RS02320 yhbY 433605..433895 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  LUY97_RS02325 nadD 433898..434467 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LUY97_RS02330 yqeK 434457..435041 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LUY97_RS02335 rsfS 435042..435395 (+) 354 WP_001088022.1 ribosome silencing factor -
  LUY97_RS02340 - 435398..436114 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  LUY97_RS02345 comEA 436154..436840 (+) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  LUY97_RS02350 - 436932..437393 (+) 462 WP_000439693.1 ComE operon protein 2 -
  LUY97_RS02355 comEC 437398..439599 (+) 2202 WP_001566051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LUY97_RS02360 holA 439656..440630 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  LUY97_RS02365 rpsT 440675..440926 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=637247 LUY97_RS02345 WP_001792568.1 436154..436840(+) (comEA) [Staphylococcus aureus strain 0104_III_ST239]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=637247 LUY97_RS02345 WP_001792568.1 436154..436840(+) (comEA) [Staphylococcus aureus strain 0104_III_ST239]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969