Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUZ05_RS14310 Genome accession   NZ_CP089481
Coordinates   2845018..2845413 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E1038_IIV_ST8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2840018..2850413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ05_RS14280 - 2841276..2841680 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LUZ05_RS14285 - 2842018..2842110 (+) 93 WP_001790611.1 hypothetical protein -
  LUZ05_RS14290 - 2842242..2842475 (+) 234 WP_000384523.1 DUF1146 family protein -
  LUZ05_RS14295 murA 2842586..2843851 (+) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUZ05_RS14300 fabZ 2843885..2844325 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUZ05_RS14305 - 2844384..2844824 (-) 441 WP_000846746.1 YwpF-like family protein -
  LUZ05_RS14310 ssb 2845018..2845413 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUZ05_RS14315 sceD 2845802..2846497 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  LUZ05_RS14320 tenA 2846883..2847572 (+) 690 WP_000396077.1 thiaminase II -
  LUZ05_RS14325 thiD 2847565..2848395 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUZ05_RS14330 thiM 2848379..2849170 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  LUZ05_RS14335 thiE 2849172..2849813 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637236 LUZ05_RS14310 WP_000932694.1 2845018..2845413(+) (ssb) [Staphylococcus aureus strain E1038_IIV_ST8]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637236 LUZ05_RS14310 WP_000932694.1 2845018..2845413(+) (ssb) [Staphylococcus aureus strain E1038_IIV_ST8]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992