Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUY99_RS06200 Genome accession   NZ_CP089479
Coordinates   1197370..1197765 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0073_III_ST239     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1192370..1202765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY99_RS06175 thiE 1192970..1193611 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  LUY99_RS06180 thiM 1193613..1194404 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  LUY99_RS06185 thiD 1194388..1195218 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUY99_RS06190 tenA 1195211..1195900 (-) 690 WP_000396077.1 thiaminase II -
  LUY99_RS06195 sceD 1196286..1196981 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  LUY99_RS06200 ssb 1197370..1197765 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUY99_RS06205 - 1197959..1198399 (+) 441 WP_000846746.1 YwpF-like family protein -
  LUY99_RS06210 fabZ 1198458..1198898 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUY99_RS06215 murA 1198932..1200197 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUY99_RS06220 - 1200308..1200541 (-) 234 WP_000384523.1 DUF1146 family protein -
  LUY99_RS06225 - 1200673..1200765 (-) 93 WP_001790611.1 hypothetical protein -
  LUY99_RS06230 - 1201103..1201507 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637174 LUY99_RS06200 WP_000932694.1 1197370..1197765(-) (ssb) [Staphylococcus aureus strain 0073_III_ST239]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637174 LUY99_RS06200 WP_000932694.1 1197370..1197765(-) (ssb) [Staphylococcus aureus strain 0073_III_ST239]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992