Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUY90_RS13920 Genome accession   NZ_CP089477
Coordinates   2783172..2783567 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0.1345_II_ST5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2778172..2788567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY90_RS13890 - 2779430..2779834 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LUY90_RS13895 - 2780172..2780264 (+) 93 WP_001790611.1 hypothetical protein -
  LUY90_RS13900 - 2780396..2780629 (+) 234 WP_000384523.1 DUF1146 family protein -
  LUY90_RS13905 murA 2780740..2782005 (+) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUY90_RS13910 fabZ 2782039..2782479 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUY90_RS13915 - 2782538..2782978 (-) 441 WP_000846746.1 YwpF-like family protein -
  LUY90_RS13920 ssb 2783172..2783567 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUY90_RS13925 sceD 2783956..2784651 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  LUY90_RS13930 tenA 2785037..2785726 (+) 690 WP_000396077.1 thiaminase II -
  LUY90_RS13935 thiD 2785719..2786549 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUY90_RS13940 thiM 2786533..2787324 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  LUY90_RS13945 thiE 2787326..2787967 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637146 LUY90_RS13920 WP_000932694.1 2783172..2783567(+) (ssb) [Staphylococcus aureus strain 0.1345_II_ST5]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637146 LUY90_RS13920 WP_000932694.1 2783172..2783567(+) (ssb) [Staphylococcus aureus strain 0.1345_II_ST5]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992