Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LUY90_RS02690 Genome accession   NZ_CP089477
Coordinates   478059..478745 (+) Length   228 a.a.
NCBI ID   WP_407301429.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0.1345_II_ST5     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473059..483745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY90_RS02655 yqeH 473586..474686 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  LUY90_RS02660 aroE 474700..475506 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  LUY90_RS02665 yhbY 475510..475800 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  LUY90_RS02670 nadD 475803..476372 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LUY90_RS02675 yqeK 476362..476946 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LUY90_RS02680 rsfS 476947..477300 (+) 354 WP_001088022.1 ribosome silencing factor -
  LUY90_RS02685 - 477303..478019 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  LUY90_RS02690 comEA 478059..478745 (+) 687 WP_407301429.1 helix-hairpin-helix domain-containing protein Machinery gene
  LUY90_RS02695 - 478837..479298 (+) 462 WP_000439693.1 ComE operon protein 2 -
  LUY90_RS02700 comEC 479303..481504 (+) 2202 WP_001566051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LUY90_RS02705 holA 481561..482535 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  LUY90_RS02710 rpsT 482580..482831 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25962.63 Da        Isoelectric Point: 9.5273

>NTDB_id=637113 LUY90_RS02690 WP_407301429.1 478059..478745(+) (comEA) [Staphylococcus aureus strain 0.1345_II_ST5]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
RNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=637113 LUY90_RS02690 WP_407301429.1 478059..478745(+) (comEA) [Staphylococcus aureus strain 0.1345_II_ST5]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
AGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.797

99.561

0.974
  comEA Staphylococcus aureus N315

96.916

99.561

0.965