Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LUZ07_RS14180 Genome accession   NZ_CP089476
Coordinates   2841278..2841673 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3596_II_ST8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2836278..2846673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ07_RS14150 - 2837536..2837940 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  LUZ07_RS14155 - 2838278..2838370 (+) 93 WP_001790611.1 hypothetical protein -
  LUZ07_RS14160 - 2838502..2838735 (+) 234 WP_000384523.1 DUF1146 family protein -
  LUZ07_RS14165 murA 2838846..2840111 (+) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LUZ07_RS14170 fabZ 2840145..2840585 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LUZ07_RS14175 - 2840644..2841084 (-) 441 WP_000846746.1 YwpF-like family protein -
  LUZ07_RS14180 ssb 2841278..2841673 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  LUZ07_RS14185 sceD 2842062..2842757 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  LUZ07_RS14190 tenA 2843143..2843832 (+) 690 WP_000396077.1 thiaminase II -
  LUZ07_RS14195 thiD 2843825..2844655 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LUZ07_RS14200 thiM 2844639..2845430 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  LUZ07_RS14205 thiE 2845432..2846073 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=637101 LUZ07_RS14180 WP_000932694.1 2841278..2841673(+) (ssb) [Staphylococcus aureus strain 3596_II_ST8]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=637101 LUZ07_RS14180 WP_000932694.1 2841278..2841673(+) (ssb) [Staphylococcus aureus strain 3596_II_ST8]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992