Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUZ07_RS07740 Genome accession   NZ_CP089476
Coordinates   1530259..1530828 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 3596_II_ST8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1525259..1535828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ07_RS07700 - 1525733..1526341 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  LUZ07_RS07705 rplL 1526516..1526884 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LUZ07_RS07710 rplJ 1526927..1527427 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  LUZ07_RS07715 rplA 1527699..1528391 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  LUZ07_RS07720 rplK 1528599..1529021 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LUZ07_RS07725 nusG 1529202..1529750 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LUZ07_RS07730 secE 1529763..1529945 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  LUZ07_RS07735 rpmG 1530001..1530144 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LUZ07_RS07740 sigH 1530259..1530828 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUZ07_RS07745 - 1530909..1531433 (-) 525 WP_000664738.1 NYN domain-containing protein -
  LUZ07_RS07750 rlmB 1531433..1532179 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUZ07_RS07755 - 1532187..1532591 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LUZ07_RS07760 cysS 1532584..1533984 (-) 1401 WP_000631964.1 cysteine--tRNA ligase -
  LUZ07_RS07765 cysE 1533968..1534615 (-) 648 WP_001838365.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=637089 LUZ07_RS07740 WP_000872873.1 1530259..1530828(-) (sigH) [Staphylococcus aureus strain 3596_II_ST8]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637089 LUZ07_RS07740 WP_000872873.1 1530259..1530828(-) (sigH) [Staphylococcus aureus strain 3596_II_ST8]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984