Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LUY92_RS07830 Genome accession   NZ_CP089473
Coordinates   1536562..1537131 (-) Length   189 a.a.
NCBI ID   WP_000872882.1    Uniprot ID   A0A7U7EXA1
Organism   Staphylococcus aureus strain 0.1239_III_ST239     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531562..1542131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY92_RS07790 - 1532037..1532645 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  LUY92_RS07795 rplL 1532820..1533188 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LUY92_RS07800 rplJ 1533231..1533731 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  LUY92_RS07805 rplA 1534002..1534694 (-) 693 WP_001578867.1 50S ribosomal protein L1 -
  LUY92_RS07810 rplK 1534902..1535324 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  LUY92_RS07815 nusG 1535505..1536053 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LUY92_RS07820 secE 1536066..1536248 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LUY92_RS07825 rpmG 1536304..1536447 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  LUY92_RS07830 sigH 1536562..1537131 (-) 570 WP_000872882.1 sigma-70 family RNA polymerase sigma factor Regulator
  LUY92_RS07835 - 1537212..1537736 (-) 525 WP_000664737.1 NYN domain-containing protein -
  LUY92_RS07840 rlmB 1537736..1538482 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LUY92_RS07845 - 1538490..1538894 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  LUY92_RS07850 cysS 1538887..1540287 (-) 1401 WP_000631969.1 cysteine--tRNA ligase -
  LUY92_RS07855 cysE 1540271..1540918 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.91 Da        Isoelectric Point: 9.4170

>NTDB_id=637045 LUY92_RS07830 WP_000872882.1 1536562..1537131(-) (sigH) [Staphylococcus aureus strain 0.1239_III_ST239]
MKYDLTTQDSTIKRNNSINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=637045 LUY92_RS07830 WP_000872882.1 1536562..1537131(-) (sigH) [Staphylococcus aureus strain 0.1239_III_ST239]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATTCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

100

100

1
  sigH Staphylococcus aureus MW2

97.884

100

0.979