Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   U063_RS03425 Genome accession   NC_022886
Coordinates   670377..670781 (+) Length   134 a.a.
NCBI ID   WP_038419820.1    Uniprot ID   -
Organism   Helicobacter pylori BM012A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 665377..675781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U063_RS03390 (U063_0670) - 665549..666487 (-) 939 WP_023591962.1 tetraacyldisaccharide 4'-kinase -
  U063_RS03395 (U063_0671) - 666484..667266 (-) 783 WP_023591963.1 NAD+ synthase -
  U063_RS03405 (U063_0673) ilvC 667516..668508 (+) 993 WP_023591964.1 ketol-acid reductoisomerase -
  U063_RS03410 (U063_0674) minD 668532..669338 (+) 807 WP_023526244.1 septum site-determining protein MinD -
  U063_RS03415 (U063_0675) minE 669335..669568 (+) 234 WP_000118278.1 cell division topological specificity factor MinE -
  U063_RS03420 (U063_0676) dprA 669580..670380 (+) 801 WP_023591965.1 DNA-processing protein DprA Machinery gene
  U063_RS03425 (U063_0677) dprB 670377..670781 (+) 405 WP_038419820.1 Holliday junction resolvase RuvX Machinery gene
  U063_RS03430 (U063_0679) - 670913..671191 (+) 279 WP_023591968.1 tetratricopeptide repeat protein -
  U063_RS08380 (U063_0680) - 671169..671666 (+) 498 Protein_653 AAA family ATPase -
  U063_RS08860 - 671669..671872 (+) 204 WP_080261063.1 hypothetical protein -
  U063_RS08865 (U063_0681) - 671884..672582 (+) 699 WP_226975758.1 DUF1887 domain-containing protein -
  U063_RS08390 (U063_0683) - 672832..672954 (+) 123 Protein_656 type II restriction endonuclease -
  U063_RS08725 (U063_0684) - 673105..673319 (-) 215 Protein_657 hypothetical protein -
  U063_RS03455 (U063_0685) - 673365..673553 (-) 189 WP_023591972.1 hypothetical protein -
  U063_RS03460 (U063_0686) mscS 673606..674430 (-) 825 WP_023591973.1 small-conductance mechanosensitive channel MscS -
  U063_RS08665 - 674580..674700 (-) 121 Protein_660 DNA adenine methylase -
  U063_RS08870 (U063_0688) - 674982..675479 (-) 498 WP_023591975.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15297.84 Da        Isoelectric Point: 9.5500

>NTDB_id=63698 U063_RS03425 WP_038419820.1 670377..670781(+) (dprB) [Helicobacter pylori BM012A]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKPHESYADTHARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=63698 U063_RS03425 WP_038419820.1 670377..670781(+) (dprB) [Helicobacter pylori BM012A]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAATGTTCAGGTACTGGTGG
TGGGCAAGCCCCATGAAAGCTATGCAGATACCCACGCCCGCATTGAGCATTTTATCAAACTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCTAGTATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTCGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.727

98.507

0.963

Multiple sequence alignment