Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | U063_RS00195 | Genome accession | NC_022886 |
| Coordinates | 37387..37500 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori BM012A | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 32387..42500
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U063_RS00170 (U063_0034) | - | 32449..34674 (+) | 2226 | WP_023591490.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| U063_RS00175 (U063_0035) | panD | 34664..35017 (+) | 354 | WP_023591491.1 | aspartate 1-decarboxylase | - |
| U063_RS00180 (U063_0036) | - | 35020..35313 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| U063_RS00185 (U063_0037) | - | 35313..36308 (+) | 996 | WP_041200974.1 | PDZ domain-containing protein | - |
| U063_RS00190 (U063_0038) | comB6 | 36316..37371 (+) | 1056 | WP_023591493.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| U063_RS00195 (U063_0039) | comB7 | 37387..37500 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| U063_RS00200 (U063_0040) | comB8 | 37497..38240 (+) | 744 | WP_023591494.1 | virB8 family protein | Machinery gene |
| U063_RS00205 (U063_0041) | comB9 | 38240..39226 (+) | 987 | WP_041200975.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| U063_RS00210 (U063_0042) | comB10 | 39219..40355 (+) | 1137 | WP_023591496.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| U063_RS00215 (U063_0043) | - | 40426..41838 (+) | 1413 | WP_023591497.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=63689 U063_RS00195 WP_001217873.1 37387..37500(+) (comB7) [Helicobacter pylori BM012A]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=63689 U063_RS00195 WP_001217873.1 37387..37500(+) (comB7) [Helicobacter pylori BM012A]
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |