Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LLE35_RS06920 Genome accession   NZ_CP106773
Coordinates   1304772..1305167 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10562     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1299772..1310167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE35_RS06885 (LLE35_06825) - 1300040..1300312 (-) 273 WP_003691603.1 ACT domain-containing protein -
  LLE35_RS06890 (LLE35_06830) - 1300437..1301174 (-) 738 WP_003691604.1 toxin-antitoxin system YwqK family antitoxin -
  LLE35_RS06895 (LLE35_06835) prmB 1301312..1302211 (-) 900 WP_014580280.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  LLE35_RS06900 (LLE35_06840) - 1302310..1302507 (-) 198 WP_162098126.1 hypothetical protein -
  LLE35_RS06905 (LLE35_06845) - 1302543..1303028 (+) 486 WP_225577457.1 hypothetical protein -
  LLE35_RS06910 (LLE35_06850) - 1303168..1303821 (+) 654 WP_229931456.1 IS1595 family transposase -
  LLE35_RS06915 (LLE35_06855) - 1304095..1304421 (+) 327 Protein_1344 hypothetical protein -
  LLE35_RS06920 (LLE35_06860) comE 1304772..1305167 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  LLE35_RS06925 (LLE35_06865) - 1305272..1305388 (-) 117 Protein_1346 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=636795 LLE35_RS06920 WP_003703428.1 1304772..1305167(-) (comE) [Neisseria gonorrhoeae strain 10562]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=636795 LLE35_RS06920 WP_003703428.1 1304772..1305167(-) (comE) [Neisseria gonorrhoeae strain 10562]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1