Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE28_RS10945 Genome accession   NZ_CP106771
Coordinates   2081193..2081609 (-) Length   138 a.a.
NCBI ID   WP_229930594.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10531     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2076193..2086609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE28_RS10920 - 2076540..2077415 (-) 876 WP_003686971.1 NUDIX hydrolase family protein -
  LLE28_RS10930 thiC 2078013..2079914 (+) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  LLE28_RS10935 - 2080403..2080773 (-) 371 Protein_2109 pilin -
  LLE28_RS10940 - 2080813..2081166 (-) 354 Protein_2110 pilin -
  LLE28_RS10945 pilE 2081193..2081609 (-) 417 WP_229930594.1 pilin Machinery gene
  LLE28_RS10950 - 2082041..2082403 (-) 363 Protein_2112 pilin -
  LLE28_RS10955 - 2082444..2082770 (-) 327 Protein_2113 pilin -
  LLE28_RS10960 - 2082789..2083133 (-) 345 Protein_2114 pilin -
  LLE28_RS10965 - 2083137..2083445 (+) 309 Protein_2115 NAD(P)-dependent oxidoreductase -
  LLE28_RS10970 metG 2083520..2085574 (-) 2055 WP_003699323.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14981.85 Da        Isoelectric Point: 9.4277

>NTDB_id=636742 LLE28_RS10945 WP_229930594.1 2081193..2081609(-) (pilE) [Neisseria gonorrhoeae strain 10531]
MPTRLDSRLRGNDEAILLAEGQKSAVTEYYLNNGEWPKDNGSAGVASASEIKGKYVKEVKVENGVVTATMASSNVNKEIK
GKKLSLWARREAGSVKWFCGQPVKRDDKDNDTVADAAGKDKIDTKHLPSTCRDPASAK

Nucleotide


Download         Length: 417 bp        

>NTDB_id=636742 LLE28_RS10945 WP_229930594.1 2081193..2081609(-) (pilE) [Neisseria gonorrhoeae strain 10531]
GTGCCGACAAGGCTGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCGAATGGCCCAAAGACAACGGCTCTGCCGGCGTGGCATCCGCTTCAGAAATCAAAGGCA
AATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAAAGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGA
CAAAGACAACGACACCGTTGCCGACGCCGCCGGCAAAGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGTGATC
CGGCATCTGCCAAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(14-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

72.464

100

0.725
  pilE Neisseria gonorrhoeae strain FA1090

70.29

100

0.703