Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LUX28_RS18510 Genome accession   NZ_CP089310
Coordinates   3707845..3708534 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain A4P130     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3702845..3713534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUX28_RS18475 (LUX28_18475) - 3703043..3703525 (-) 483 WP_053574009.1 flagellar protein FlgN -
  LUX28_RS18480 (LUX28_18480) flgM 3703540..3703806 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LUX28_RS18485 (LUX28_18485) - 3703876..3704295 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  LUX28_RS18490 (LUX28_18490) comFC 3704369..3705058 (-) 690 WP_199910801.1 phosphoribosyltransferase family protein Machinery gene
  LUX28_RS18495 (LUX28_18495) - 3705064..3705348 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  LUX28_RS18500 (LUX28_18500) comFA 3705406..3706791 (-) 1386 WP_053574011.1 DEAD/DEAH box helicase Machinery gene
  LUX28_RS18505 (LUX28_18505) - 3706899..3707747 (-) 849 WP_053574012.1 DegV family protein -
  LUX28_RS18510 (LUX28_18510) degU 3707845..3708534 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LUX28_RS18515 (LUX28_18515) degS 3708611..3709774 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  LUX28_RS18520 (LUX28_18520) - 3709997..3710644 (+) 648 WP_003151384.1 YigZ family protein -
  LUX28_RS18525 (LUX28_18525) - 3710649..3711863 (+) 1215 WP_015418337.1 LCP family protein -
  LUX28_RS18530 (LUX28_18530) - 3711962..3713038 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=636429 LUX28_RS18510 WP_003219701.1 3707845..3708534(-) (degU) [Bacillus velezensis strain A4P130]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=636429 LUX28_RS18510 WP_003219701.1 3707845..3708534(-) (degU) [Bacillus velezensis strain A4P130]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCTATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1