Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LUX28_RS18490 Genome accession   NZ_CP089310
Coordinates   3704369..3705058 (-) Length   229 a.a.
NCBI ID   WP_199910801.1    Uniprot ID   -
Organism   Bacillus velezensis strain A4P130     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3699369..3710058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUX28_RS18455 (LUX28_18455) fliW 3699460..3699891 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  LUX28_RS18460 (LUX28_18460) - 3699921..3700490 (-) 570 WP_007407476.1 DUF6470 family protein -
  LUX28_RS18465 (LUX28_18465) flgL 3700581..3701498 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  LUX28_RS18470 (LUX28_18470) flgK 3701510..3703027 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  LUX28_RS18475 (LUX28_18475) - 3703043..3703525 (-) 483 WP_053574009.1 flagellar protein FlgN -
  LUX28_RS18480 (LUX28_18480) flgM 3703540..3703806 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LUX28_RS18485 (LUX28_18485) - 3703876..3704295 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  LUX28_RS18490 (LUX28_18490) comFC 3704369..3705058 (-) 690 WP_199910801.1 phosphoribosyltransferase family protein Machinery gene
  LUX28_RS18495 (LUX28_18495) - 3705064..3705348 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  LUX28_RS18500 (LUX28_18500) comFA 3705406..3706791 (-) 1386 WP_053574011.1 DEAD/DEAH box helicase Machinery gene
  LUX28_RS18505 (LUX28_18505) - 3706899..3707747 (-) 849 WP_053574012.1 DegV family protein -
  LUX28_RS18510 (LUX28_18510) degU 3707845..3708534 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LUX28_RS18515 (LUX28_18515) degS 3708611..3709774 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25143.74 Da        Isoelectric Point: 8.2927

>NTDB_id=636427 LUX28_RS18490 WP_199910801.1 3704369..3705058(-) (comFC) [Bacillus velezensis strain A4P130]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=636427 LUX28_RS18490 WP_199910801.1 3704369..3705058(-) (comFC) [Bacillus velezensis strain A4P130]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCTA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598