Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PALA17_RS01000 Genome accession   NZ_CP106745
Coordinates   220455..221078 (+) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain PALA17     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 215455..226078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA17_RS00975 (PALA17_00194) - 216540..216767 (-) 228 WP_003097347.1 DUF1161 domain-containing protein -
  PALA17_RS00980 (PALA17_00195) - 216951..217166 (-) 216 WP_003097345.1 dodecin -
  PALA17_RS00985 (PALA17_00196) trpI 217267..218154 (-) 888 WP_012613425.1 trpBA operon transcriptional activator TrpI -
  PALA17_RS00990 (PALA17_00197) trpB 218258..219466 (+) 1209 WP_003097340.1 tryptophan synthase subunit beta -
  PALA17_RS00995 (PALA17_00198) trpA 219463..220269 (+) 807 WP_003158557.1 tryptophan synthase subunit alpha -
  PALA17_RS01000 (PALA17_00199) letA 220455..221078 (+) 624 WP_003111192.1 response regulator transcription factor Regulator
  PALA17_RS01005 (PALA17_00200) - 221086..221451 (+) 366 WP_012613424.1 Hpt domain-containing protein -
  PALA17_RS01010 (PALA17_00201) - 221430..221807 (-) 378 WP_003114635.1 DOPA 4,5-dioxygenase family protein -
  PALA17_RS01015 (PALA17_00202) - 221818..222732 (-) 915 WP_003122286.1 choline sulfate utilization transcriptional regulator -
  PALA17_RS01020 (PALA17_00203) betC 222845..224356 (+) 1512 WP_003097323.1 choline-sulfatase -
  PALA17_RS01025 (PALA17_00204) - 224373..225296 (+) 924 WP_003118485.1 choline ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=636201 PALA17_RS01000 WP_003111192.1 220455..221078(+) (letA) [Pseudomonas aeruginosa strain PALA17]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=636201 PALA17_RS01000 WP_003111192.1 220455..221078(+) (letA) [Pseudomonas aeruginosa strain PALA17]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGATGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAATACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362