Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LT232_RS17930 Genome accession   NZ_CP089287
Coordinates   3612744..3613388 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain GSBZ09     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3607744..3618388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT232_RS17905 (LT232_17905) - 3608196..3608537 (-) 342 WP_007408677.1 hypothetical protein -
  LT232_RS17910 (LT232_17910) degQ 3609000..3609140 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LT232_RS17915 (LT232_17915) - 3609348..3610208 (+) 861 WP_157774448.1 polyprenyl synthetase family protein -
  LT232_RS17920 (LT232_17920) comX 3610177..3610350 (+) 174 WP_012118314.1 competence pheromone ComX -
  LT232_RS17925 (LT232_17925) - 3610364..3612663 (+) 2300 Protein_3507 sensor histidine kinase -
  LT232_RS17930 (LT232_17930) comA 3612744..3613388 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  LT232_RS17935 (LT232_17935) - 3613410..3613793 (+) 384 WP_012118312.1 hotdog fold thioesterase -
  LT232_RS17940 (LT232_17940) mnhG 3613833..3614207 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  LT232_RS17945 (LT232_17945) - 3614191..3614475 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  LT232_RS17950 (LT232_17950) - 3614475..3614951 (-) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  LT232_RS17955 (LT232_17955) - 3614957..3616438 (-) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  LT232_RS17960 (LT232_17960) - 3616431..3616772 (-) 342 WP_015418102.1 Na(+)/H(+) antiporter subunit C -
  LT232_RS17965 (LT232_17965) - 3616772..3617203 (-) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=636190 LT232_RS17930 WP_003152052.1 3612744..3613388(+) (comA) [Bacillus velezensis strain GSBZ09]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=636190 LT232_RS17930 WP_003152052.1 3612744..3613388(+) (comA) [Bacillus velezensis strain GSBZ09]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864