Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LT232_RS15965 Genome accession   NZ_CP089287
Coordinates   3223231..3223920 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain GSBZ09     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3218231..3228920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT232_RS15945 (LT232_15945) - 3218706..3219782 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  LT232_RS15950 (LT232_15950) - 3219881..3221116 (-) 1236 WP_025285355.1 LCP family protein -
  LT232_RS15955 (LT232_15955) - 3221121..3221768 (-) 648 WP_007407485.1 YigZ family protein -
  LT232_RS15960 (LT232_15960) degS 3221991..3223154 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  LT232_RS15965 (LT232_15965) degU 3223231..3223920 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LT232_RS15970 (LT232_15970) - 3224018..3224866 (+) 849 WP_094031329.1 DegV family protein -
  LT232_RS15975 (LT232_15975) comFA 3224975..3226360 (+) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  LT232_RS15980 (LT232_15980) - 3226418..3226702 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  LT232_RS15985 (LT232_15985) comFC 3226708..3227397 (+) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  LT232_RS15990 (LT232_15990) - 3227471..3227890 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  LT232_RS15995 (LT232_15995) flgM 3227960..3228226 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LT232_RS16000 (LT232_16000) - 3228241..3228723 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=636184 LT232_RS15965 WP_003219701.1 3223231..3223920(+) (degU) [Bacillus velezensis strain GSBZ09]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=636184 LT232_RS15965 WP_003219701.1 3223231..3223920(+) (degU) [Bacillus velezensis strain GSBZ09]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1