Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   LT232_RS11155 Genome accession   NZ_CP089287
Coordinates   2280733..2280852 (-) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain GSBZ09     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2275733..2285852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT232_RS11130 (LT232_11130) - 2275974..2276732 (-) 759 WP_012116804.1 ABC transporter ATP-binding protein -
  LT232_RS11135 (LT232_11135) - 2276726..2277673 (-) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  LT232_RS11140 (LT232_11140) ceuB 2277663..2278616 (-) 954 WP_059366593.1 ABC transporter permease Machinery gene
  LT232_RS11145 (LT232_11145) - 2279030..2280394 (+) 1365 WP_052827044.1 aspartate kinase -
  LT232_RS11150 (LT232_11150) - 2280474..2280584 (+) 111 WP_369878517.1 YjcZ family sporulation protein -
  LT232_RS11155 (LT232_11155) phrC 2280733..2280852 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LT232_RS11160 (LT232_11160) rapC 2280836..2281984 (-) 1149 WP_012116798.1 Rap family tetratricopeptide repeat protein Regulator
  LT232_RS11165 (LT232_11165) - 2282137..2283570 (-) 1434 WP_162492834.1 sensor histidine kinase -
  LT232_RS11170 (LT232_11170) - 2283557..2284240 (-) 684 WP_007410267.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=636165 LT232_RS11155 WP_003156334.1 2280733..2280852(-) (phrC) [Bacillus velezensis strain GSBZ09]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=636165 LT232_RS11155 WP_003156334.1 2280733..2280852(-) (phrC) [Bacillus velezensis strain GSBZ09]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGAGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718