Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PALA16_RS02135 Genome accession   NZ_CP106744
Coordinates   459753..460118 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PALA16     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 454753..465118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA16_RS02105 (PALA16_00423) pyrR 455375..455887 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PALA16_RS02110 (PALA16_00424) ruvX 455999..456433 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  PALA16_RS02115 (PALA16_00425) - 456433..457002 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  PALA16_RS02120 (PALA16_00426) - 457051..457944 (-) 894 WP_003160914.1 energy transducer TonB -
  PALA16_RS02125 (PALA16_00427) gshB 458091..459044 (-) 954 WP_003100943.1 glutathione synthase -
  PALA16_RS02130 (PALA16_00428) pilG 459299..459706 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PALA16_RS02135 (PALA16_00429) pilH 459753..460118 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PALA16_RS02140 (PALA16_00430) - 460169..460705 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PALA16_RS02145 (PALA16_00431) pilJ 460790..462838 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  PALA16_RS02150 (PALA16_00432) pilK 462899..463774 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=636104 PALA16_RS02135 WP_003084587.1 459753..460118(+) (pilH) [Pseudomonas aeruginosa strain PALA16]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=636104 PALA16_RS02135 WP_003084587.1 459753..460118(+) (pilH) [Pseudomonas aeruginosa strain PALA16]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364