Detailed information NTG0636104

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: LUA78_RS05060
• Genome accession: NZ_CP089283
• Coordinates: 1068074..1069060 (+)
• Length: 328 a.a.
• NCBI ID: WP_001878684.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain J99 derivative isolate D1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1063074..1074060

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUA78_RS05030 (LUA78_05030)	panD	1064479..1064833 (+)	355	Protein_975	aspartate 1-decarboxylase	-
LUA78_RS05035 (LUA78_05035)	-	1064836..1065138 (+)	303	WP_000347931.1	YbaB/EbfC family nucleoid-associated protein	-
LUA78_RS05040 (LUA78_05040)	-	1065138..1066142 (+)	1005	WP_000468465.1	PDZ domain-containing protein	-
LUA78_RS05045 (LUA78_05045)	comB6	1066150..1067205 (+)	1056	WP_000679725.1	P-type conjugative transfer protein TrbL	Machinery gene
LUA78_RS05050 (LUA78_05050)	comB7	1067221..1067334 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
LUA78_RS05055 (LUA78_05055)	comB8	1067331..1068074 (+)	744	WP_000660577.1	type IV secretion system protein	Machinery gene
LUA78_RS05060 (LUA78_05060)	comB9	1068074..1069060 (+)	987	WP_001878684.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
LUA78_RS05065 (LUA78_05065)	comB10	1069053..1070183 (+)	1131	WP_001045766.1	DNA type IV secretion system protein ComB10	Machinery gene
LUA78_RS05070 (LUA78_05070)	-	1070253..1071665 (+)	1413	WP_234618007.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
LUA78_RS05075 (LUA78_05075)	gmd	1071706..1072851 (+)	1146	WP_046655973.1	GDP-mannose 4,6-dehydratase	-
LUA78_RS05080 (LUA78_05080)	-	1072844..1073776 (+)	933	WP_001002487.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 38029.85 Da
• Isoelectric Point: 9.7120

>NTDB_id=636104 LUA78_RS05060 WP_001878684.1 1068074..1069060(+) (comB9) [Helicobacter pylori strain J99 derivative isolate D1]
MRKVLYALMGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMSENAPKDAQKNNKPLKEEKEETKEKEEETIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCL
WACSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCIR
FVKRRKGE

Nucleotide

• Length: 987 bp

>NTDB_id=636104 LUA78_RS05060 WP_001878684.1 1068074..1069060(+) (comB9) [Helicobacter pylori strain J99 derivative isolate D1]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTGTTGGTTTTTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACTTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
CAATGATCGCATTTTACTCATCAAACCCTTACAAATCGGCGTGGATTCTAATATCAGCGTGATTGATAGCGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAC
TATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGTCTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACCA
ACGCGATGAAAATTATTAAAAAAGACATCCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
TGGGCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTAAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATT
TGACAAAAGATTAGCACTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAATCCGGTGAATACAAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGTTGGGTAAGGATTATCTGTGTATCCGT
TTTGTCAAAAGGCGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-319)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	93.293	100	0.933