Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LT107_RS08620 Genome accession   NZ_CP089282
Coordinates   1892008..1894224 (+) Length   738 a.a.
NCBI ID   WP_031599463.1    Uniprot ID   -
Organism   Pseudomonas amygdali pv. loropetali strain AAC     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1887008..1899224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT107_RS08605 (LT107_08605) - 1889347..1889970 (+) 624 WP_031594866.1 glutathione S-transferase -
  LT107_RS08610 (LT107_08610) - 1890154..1891086 (+) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  LT107_RS08615 (LT107_08615) - 1891083..1891871 (+) 789 WP_002552673.1 ABC transporter permease -
  LT107_RS08620 (LT107_08620) comA 1892008..1894224 (+) 2217 WP_031599463.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LT107_RS08625 (LT107_08625) exbB 1894267..1894983 (+) 717 WP_010214839.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LT107_RS08630 (LT107_08630) - 1894980..1895411 (+) 432 WP_002552677.1 biopolymer transporter ExbD -
  LT107_RS08635 (LT107_08635) lpxK 1895411..1896406 (+) 996 WP_054098560.1 tetraacyldisaccharide 4'-kinase -
  LT107_RS08640 (LT107_08640) - 1896424..1896609 (+) 186 WP_002552679.1 Trm112 family protein -
  LT107_RS08645 (LT107_08645) kdsB 1896606..1897370 (+) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LT107_RS08650 (LT107_08650) murB 1897405..1898424 (+) 1020 WP_057442331.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80512.82 Da        Isoelectric Point: 9.9505

>NTDB_id=636068 LT107_RS08620 WP_031599463.1 1892008..1894224(+) (comA) [Pseudomonas amygdali pv. loropetali strain AAC]
MRTGMIALASGLVALRFLPALPPTWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALNDRLVHRLDGQTLWLQG
KVVGLPSVAEGVVRFELEGARSRRAILPARIRVAWYGGPQVNSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLTPARGAWRDLIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPWACALAFIAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILVLIFSGRLGAWNWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSLIVLPPAL
LGTLLLPVSGVGEGLLWLAGGALEWLFMFLGWVAAVLPAWLPSAMPGWAWLLSLLGAFILLLPKGVPMRLLGWPLLLLCV
FPPLDSVPAGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHADSDHAGGA
AAVHQAFPVDRVLGGELARLAPQLDARLCESDARWEWDGVMFSTWRWEQGPDGNPASCMLSVDAGGERLLLTGDIDVDAE
RAAIASGFDLRAHWLQSPHHGSRTSSSKVFLQAVGAVGVLISRGRNNAFGHPHPLVMARYRWLGMASYDSAELGAVSLRL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=636068 LT107_RS08620 WP_031599463.1 1892008..1894224(+) (comA) [Pseudomonas amygdali pv. loropetali strain AAC]
ATGCGCACAGGGATGATCGCGCTCGCGTCGGGGCTTGTGGCCTTACGCTTTCTGCCTGCTTTGCCGCCGACCTGGCTGTT
GCTGCTGATGCCGATACTGGCGTTGATGCTGCTACCGTTTCGCACCTATCCACTGGCGCTGTTCCTGCTCGGTTTTACCT
GGGCGTGTGTTTCTGCGCAGTGGGCGTTGAATGACCGTCTGGTTCATCGTCTGGACGGTCAGACGCTGTGGCTGCAAGGC
AAGGTAGTCGGTTTGCCCAGTGTCGCCGAGGGCGTGGTGCGTTTCGAACTGGAAGGGGCAAGGTCGCGCAGGGCGATATT
GCCTGCACGCATCCGGGTGGCGTGGTACGGCGGTCCGCAGGTCAACAGCGGTGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCTGATGCTTTTGATTACGAAGCCTGGCTGTTGGCGCAGCGCATCGGTGCCACCGGT
ACGGTGGTGGATGGTCAACTGCTGACACCTGCGCGCGGGGCGTGGCGCGACCTTATTCGTCAGCGCTTGCTGGCGGTCGA
TGCGCAGGGCAGAGAGGGCGGCTTGGCGGCGCTGGTGCTGGGCGATGGCTCCGGATTGTCGAGCACCGATTGGCAGGTGC
TGCAGGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGCCAGCATATCGGTTTGCTGGCCGGGGTGATTTACGCGCTG
GTCGCAGGCCTTGCACGCTGGGGGCTGTGGCCACGGGCTTTGCCCTGGCTGCCTTGGGCCTGTGCGCTGGCGTTCATCGC
TGCGCTGGGTTACGGGCTGCTGGCCGGTTTCGAGGTGCCGGTACGGCGTGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGTTTGCGCTTTCGGCACCTGGGCGTTGTCTGGCCGTTGTTACTGTCATTCAACGCGGTGCTGATTTTCGAGCCGCTG
GTGACACTGCAGCCGGGGTTCTGGCTGTCTTTCGCGGCGGTTGGCATTCTGGTGCTGATTTTCAGTGGACGTCTCGGTGC
CTGGAATTGGTGGCAAAGCTGGACGCGTGCGCAGTGGCTGATCGCAATTGGCTTGCTGCCTATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGGCCGTTTGCCAATTTGCTGGCTGTGCCCTGGGTCAGCTTGATCGTCCTGCCGCCTGCGTTG
CTTGGAACACTGCTGCTGCCGGTCTCTGGTGTGGGCGAAGGCTTGCTCTGGCTGGCCGGAGGGGCGCTGGAGTGGCTGTT
TATGTTTCTCGGCTGGGTTGCCGCAGTCTTGCCCGCCTGGTTGCCCAGTGCAATGCCAGGCTGGGCGTGGCTGCTTAGTC
TGCTCGGGGCCTTCATTTTATTACTGCCCAAAGGCGTGCCGATGCGTCTGCTGGGTTGGCCATTGCTGTTGCTGTGCGTT
TTTCCACCGCTCGACTCAGTGCCTGCAGGCCAGGTAGAAGTATTGCAGCTGGACGTGGGGCAGGGCCTGGCCATTCTCCT
GCGCACTCGAAATCACACGCTCTTGTACGACGCAGGTCCACGTTTCGGCGAGTTCGATATCGGTCAGCGTGTGGTCGTGC
CCGCCATGCGCAAGGCCGGTGTGCGTCATCTGGACCTGATGTTGATCAGTCACGCCGACTCCGATCATGCCGGGGGCGCA
GCGGCGGTTCATCAGGCATTTCCGGTTGACCGTGTACTGGGCGGTGAGCTGGCCAGGCTCGCGCCGCAACTCGACGCGCG
GTTGTGTGAGAGCGATGCGCGCTGGGAGTGGGATGGGGTGATGTTCTCCACCTGGCGCTGGGAGCAGGGCCCTGATGGCA
ATCCGGCATCCTGCATGTTGAGTGTCGACGCAGGGGGCGAGCGTCTGCTGCTGACGGGTGATATAGACGTCGACGCGGAA
CGTGCGGCAATCGCCAGCGGTTTCGACCTTCGTGCCCATTGGTTGCAGTCCCCGCATCACGGCAGCCGGACCTCGTCATC
CAAAGTATTTCTTCAGGCCGTCGGAGCGGTTGGCGTGCTGATCTCCCGTGGCCGTAACAACGCCTTCGGCCACCCGCATC
CGTTGGTCATGGCGCGTTATCGATGGCTGGGTATGGCCAGTTATGACAGCGCTGAGCTGGGCGCTGTCAGTCTGCGGCTG
GGGACGTTCGGCACGCCGCAGGCAGAGCGCGCGCAACGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-667)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.151

97.019

0.603
  comA Ralstonia pseudosolanacearum GMI1000

32.787

100

0.379