Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   LTQ02_RS10930 Genome accession   NZ_CP089205
Coordinates   2455816..2456421 (+) Length   201 a.a.
NCBI ID   WP_017079965.1    Uniprot ID   A0A1R3EZ21
Organism   Vibrio splendidus strain 4_C08b     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2450816..2461421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ02_RS10910 (LTQ02_10910) - 2451050..2451967 (-) 918 WP_231903892.1 ABC transporter ATP-binding protein -
  LTQ02_RS10915 (LTQ02_10915) - 2452290..2453921 (-) 1632 WP_243579596.1 SulP family inorganic anion transporter -
  LTQ02_RS10920 (LTQ02_10920) can 2454209..2454868 (+) 660 WP_004735453.1 carbonate dehydratase -
  LTQ02_RS10925 (LTQ02_10925) hpt 2454948..2455478 (-) 531 WP_004735452.1 hypoxanthine phosphoribosyltransferase -
  LTQ02_RS10930 (LTQ02_10930) opaR 2455816..2456421 (+) 606 WP_017079965.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  LTQ02_RS10935 (LTQ02_10935) lpdA 2456618..2458045 (-) 1428 WP_004735450.1 dihydrolipoyl dehydrogenase -
  LTQ02_RS10940 (LTQ02_10940) aceF 2458288..2460169 (-) 1882 Protein_2144 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23217.47 Da        Isoelectric Point: 6.4040

>NTDB_id=635746 LTQ02_RS10930 WP_017079965.1 2455816..2456421(+) (opaR) [Vibrio splendidus strain 4_C08b]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAHDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=635746 LTQ02_RS10930 WP_017079965.1 2455816..2456421(+) (opaR) [Vibrio splendidus strain 4_C08b]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCTCTTGA
GGTATTCTCTCGCCGCGGTATTGGTCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCTGTAGCAACGGTAT
TTAATTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTGCTTAATCATGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCACGA
TAGCCATTGGTTGAACGTATGGTTTGAATGGAGCGCTTCGACTCGTGATGAAGTATGGCCTCTATTCGTAACCACCAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAACGCGGCGAAGTTTGCGATGATCACGATCCTAAA
CATCTAGCGAACCTATTCCACGGCATCTGCTACTCACTGTTCATTCAAGCGAAACGTGTAGAAACGCCAGAAGAGCTTTC
AAGCTTAACGGATAGTTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3EZ21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82

99.502

0.816
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726