Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   LTQ02_RS04125 Genome accession   NZ_CP089205
Coordinates   918342..919523 (-) Length   393 a.a.
NCBI ID   WP_243579143.1    Uniprot ID   -
Organism   Vibrio splendidus strain 4_C08b     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 913342..924523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ02_RS04110 (LTQ02_04110) - 913805..914707 (+) 903 WP_017065498.1 Vmh family MBL fold metallo-hydrolase -
  LTQ02_RS04115 (LTQ02_04115) - 915016..915833 (+) 818 Protein_789 TauD/TfdA family dioxygenase -
  LTQ02_RS04120 (LTQ02_04120) cqsS 916089..918137 (+) 2049 WP_004734844.1 hybrid sensor histidine kinase/response regulator Regulator
  LTQ02_RS04125 (LTQ02_04125) cqsA 918342..919523 (-) 1182 WP_243579143.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  LTQ02_RS04130 (LTQ02_04130) - 919861..921243 (-) 1383 WP_243579142.1 PLP-dependent aminotransferase family protein -
  LTQ02_RS04135 (LTQ02_04135) - 921347..922244 (+) 898 Protein_793 EamA family transporter -
  LTQ02_RS04140 (LTQ02_04140) - 922454..923466 (-) 1013 Protein_794 GTP-binding protein -
  LTQ02_RS04145 (LTQ02_04145) - 923456..924016 (-) 561 WP_102547856.1 carbonate dehydratase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43720.78 Da        Isoelectric Point: 6.2266

>NTDB_id=635738 LTQ02_RS04125 WP_243579143.1 918342..919523(-) (cqsA) [Vibrio splendidus strain 4_C08b]
MSDKTKTKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPPRNAVVMQSNDYLALSHNKPIQQAHQAAISEHDDNVVMS
AIFLQDEQSKPAFETELANYVGMESCLLSQSGWAANIGLLQTICPPDTPVYIDFFAHMSLWEGIRAAGALAHPFMHNNMN
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGLVHALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSETLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGAEDKREALFKSAKSLTTGLKRIGFNIRSESQ
IVALECGSERNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYNHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=635738 LTQ02_RS04125 WP_243579143.1 918342..919523(-) (cqsA) [Vibrio splendidus strain 4_C08b]
ATGAGTGATAAAACAAAAACCAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTAATTAC
CCAGAACCAAAGCCAAAAGCATTTGGTTTTGGGTAAACGTCCACCACGCAACGCTGTTGTCATGCAGAGCAATGATTACC
TAGCACTGTCACATAACAAGCCGATCCAACAAGCTCACCAAGCGGCGATCAGTGAACACGATGACAACGTGGTGATGTCT
GCAATTTTCTTACAAGATGAGCAGTCTAAACCTGCGTTCGAAACTGAGCTCGCGAACTATGTCGGAATGGAGAGCTGTTT
GCTTTCTCAGTCTGGTTGGGCAGCTAATATTGGGCTATTGCAAACCATCTGCCCACCGGACACACCTGTGTACATTGACT
TCTTTGCACACATGTCGTTATGGGAAGGCATTCGCGCTGCAGGCGCCCTCGCCCACCCGTTTATGCATAACAATATGAAT
CACCTGCGCAAACAGCTAGAGCGCCACGGCTCAGGCGTTATTGTGGTCGACTCGGTTTACAGCACAATCGGCACCATCGC
CCCACTACGCGACATCTACGAAATGGCGCAGGAATTTGATTGTGCCGTCGTCGTTGATGAATCGCATTCACTGGGTACGC
ATGGGGAAAATGGAGCTGGCTTAGTTCACGCATTGGGTCTCACTAATCAAGTCGACTTCATTACCGTCAGTTTGGCTAAA
ACCTTTGCTTATCGTGCAGGCGCTATTCTTGGGCCGAAGCAGCTTTCAGAAACCTTACCTTTTGTCGCGTATCCAGCTAT
TTTCAGCTCGACCGTGTTACCACAAGAGGTGGTTCGTTTAGAGAAAACATTAGAGGTAATAAAAGGTGCAGAAGACAAAC
GAGAAGCCTTATTCAAAAGCGCTAAATCGCTTACTACTGGCCTCAAACGGATTGGCTTTAACATCCGCAGCGAGTCTCAA
ATCGTGGCACTAGAGTGTGGTAGTGAAAGAAACACCGAACGTGTTCGTGATTTCCTCGAAGAACGAGATGTATTCGGTGC
GGTTTTCTGCCGCCCCGCGACGGGCAAGAACAAAAACATCATCCGCTTTTCGGTCAATGCCGACATGACACCAAGAGATA
TTGACCATGTGCTCACCGTTTGTCATGAAGCGTACAATCATCCGGAATTAGAGTTCGTGTGA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55