Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   LTQ02_RS04120 Genome accession   NZ_CP089205
Coordinates   916089..918137 (+) Length   682 a.a.
NCBI ID   WP_004734844.1    Uniprot ID   -
Organism   Vibrio splendidus strain 4_C08b     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 911089..923137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ02_RS04105 (LTQ02_04105) - 912735..913628 (-) 894 WP_017065497.1 LysR family transcriptional regulator -
  LTQ02_RS04110 (LTQ02_04110) - 913805..914707 (+) 903 WP_017065498.1 Vmh family MBL fold metallo-hydrolase -
  LTQ02_RS04115 (LTQ02_04115) - 915016..915833 (+) 818 Protein_789 TauD/TfdA family dioxygenase -
  LTQ02_RS04120 (LTQ02_04120) cqsS 916089..918137 (+) 2049 WP_004734844.1 hybrid sensor histidine kinase/response regulator Regulator
  LTQ02_RS04125 (LTQ02_04125) cqsA 918342..919523 (-) 1182 WP_243579143.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  LTQ02_RS04130 (LTQ02_04130) - 919861..921243 (-) 1383 WP_243579142.1 PLP-dependent aminotransferase family protein -
  LTQ02_RS04135 (LTQ02_04135) - 921347..922244 (+) 898 Protein_793 EamA family transporter -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78356.34 Da        Isoelectric Point: 5.6126

>NTDB_id=635737 LTQ02_RS04120 WP_004734844.1 916089..918137(+) (cqsS) [Vibrio splendidus strain 4_C08b]
MNAIRKVYQYAEPNLTLVGWMGFVGFPIYYIVWEFLFPQPYENLMLRLFCSVLFFGIIYRNRVPFEWRKYLPAYYQVAVT
ICLPGFFFYMLLMNNWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGMATLCAWIAQGFYLELTMDWTHVPIFLFIY
LFGNLFYFRNQMEHENKVSLAKSFGAGIAHEMRNPLSGLLTSIDVMQSILPNPKSGDHKGQYALSNEEVIQLREVGDEAM
EIIHSGNETIDLLLTSIDENRVSRSTFKKHSAQAVIEGAIDSFNYKRSADKSAISLDVQSNFDFLGSDTLLKYVMYNLFK
NAFHHRSPEDFHIHVTMCSDEVANQIMVTDNGSGISNDVIRRIFQDFYTTGQSGNYGLGLPFCQKVMRSFGGEIKCQSEV
DQWTQFTMTFPSLSSHSVKEIKNELTKLKTVLMVSDQKVLTNKMTEVARFMGFELTVLDVASALKNKEYQFEFDLIFVDM
ESLDLRASCLDRIESLLSFTEARIIYLYEHHPIKRVRNVAFEPIWVETQVWLLNTRATIERLLFDSNYVMPSVSVKPLEA
TNKRTIMVVDDNESLRRFTAMLLEKQGFDVVQKEDGQQALDALDSDDIDLILMDIEMPIMDGVEASRRIRSANKAYSSVP
IIAHTGDSSPVTLEKMESSGMSDFIVKPADKNRLFDKIAHWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=635737 LTQ02_RS04120 WP_004734844.1 916089..918137(+) (cqsS) [Vibrio splendidus strain 4_C08b]
ATGAACGCTATTCGTAAAGTTTATCAGTACGCAGAACCAAACCTTACTCTCGTGGGTTGGATGGGCTTTGTCGGCTTCCC
AATTTACTACATAGTGTGGGAGTTCTTGTTCCCTCAACCTTATGAAAACTTAATGCTGCGTCTGTTTTGCTCAGTGTTAT
TTTTCGGCATTATCTATCGCAATCGTGTCCCATTTGAATGGCGAAAATACCTTCCGGCTTATTATCAAGTTGCTGTAACT
ATCTGTTTGCCAGGTTTCTTCTTCTACATGCTACTCATGAATAATTGGTCCAACGTTTGGGTTATGTCGTTCATGTCGGC
CATTTTCCTCCATATTTTATTAGTGCACGTGACGAGAGTGATGTTTGCACAAACCTTTGCCGGTATTGGGATGGCGACCT
TGTGCGCTTGGATTGCACAAGGCTTCTACCTAGAACTCACAATGGATTGGACGCATGTGCCAATCTTTTTGTTTATCTAC
TTATTTGGCAACTTGTTCTACTTCCGCAATCAGATGGAACACGAGAATAAGGTGTCGTTGGCTAAATCTTTTGGAGCCGG
TATCGCGCACGAGATGCGAAACCCCCTGAGCGGTTTGTTGACCTCTATTGATGTTATGCAGTCCATATTGCCGAACCCTA
AAAGTGGTGATCACAAAGGGCAATATGCTTTAAGCAACGAAGAAGTCATACAGTTACGTGAAGTGGGCGATGAAGCGATG
GAGATCATTCACTCAGGTAACGAGACGATTGACCTGTTACTGACTTCAATTGATGAAAACCGAGTATCTCGATCTACCTT
CAAGAAGCATTCAGCTCAAGCGGTGATTGAGGGTGCGATAGACAGCTTTAACTACAAGCGTTCAGCCGATAAATCAGCAA
TCTCTTTAGACGTACAGAGTAACTTTGATTTCTTGGGTAGCGACACTTTGTTGAAGTACGTAATGTATAACTTGTTCAAG
AACGCATTCCACCATCGCAGCCCTGAAGATTTTCATATTCATGTCACTATGTGTAGTGATGAAGTGGCCAATCAAATAAT
GGTTACCGATAACGGATCAGGCATCTCAAATGATGTGATTCGACGCATTTTTCAGGACTTTTATACTACTGGCCAATCGG
GTAATTACGGCTTAGGTTTGCCATTTTGTCAGAAGGTAATGCGCTCGTTTGGTGGTGAAATTAAATGTCAGTCTGAAGTG
GATCAATGGACACAGTTCACGATGACTTTTCCATCTTTGTCTTCCCATTCGGTCAAAGAAATCAAGAATGAACTGACTAA
ACTTAAGACTGTGTTAATGGTGAGTGACCAGAAAGTTCTCACCAATAAAATGACTGAGGTAGCCCGTTTTATGGGGTTTG
AGCTCACGGTGTTGGATGTAGCATCAGCGCTTAAAAATAAGGAATACCAGTTCGAATTCGACTTGATATTCGTTGACATG
GAGAGCTTGGATTTAAGAGCAAGTTGCCTCGATAGGATTGAATCTTTACTTTCATTCACTGAAGCTCGAATCATCTATTT
GTATGAACATCACCCAATTAAACGTGTCCGAAACGTTGCTTTTGAACCTATTTGGGTGGAAACACAAGTTTGGCTACTGA
ATACCAGGGCGACCATTGAACGCTTACTTTTCGACTCCAACTATGTGATGCCATCAGTTTCTGTAAAACCGTTAGAGGCT
ACCAATAAGCGCACGATCATGGTGGTCGATGATAACGAATCTCTGCGCCGATTTACCGCGATGTTATTGGAAAAGCAGGG
TTTTGATGTCGTGCAGAAAGAAGATGGGCAACAAGCCTTAGACGCGTTGGACAGCGATGATATCGATCTAATTCTTATGG
ATATCGAGATGCCCATCATGGACGGTGTTGAAGCTTCTCGTCGGATTCGAAGCGCTAACAAAGCATACTCTTCGGTGCCA
ATTATTGCTCACACAGGTGACAGCTCGCCAGTCACTTTAGAGAAAATGGAATCGTCAGGCATGTCAGATTTTATCGTGAA
ACCGGCAGACAAAAATCGATTGTTCGACAAAATTGCTCACTGGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-411)

His Kinase A (phospho-acceptor) domain (HisKA)

(184-257)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

47.959

100

0.482