Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   F6Y16_RS04050 Genome accession   NZ_AP020318
Coordinates   783130..784281 (-) Length   383 a.a.
NCBI ID   WP_000020361.1    Uniprot ID   A0A0H2XEJ4
Organism   Staphylococcus aureus strain KUH180038     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 778130..789281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6Y16_RS04030 (KUH180038_0739) - 778526..779323 (-) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -
  F6Y16_RS04035 (KUH180038_0740) - 779497..779712 (+) 216 WP_000026308.1 hypothetical protein -
  F6Y16_RS04040 (KUH180038_0741) rny 780009..781568 (-) 1560 WP_001050785.1 ribonuclease Y -
  F6Y16_RS04045 (KUH180038_0742) recA 781922..782965 (-) 1044 WP_000368166.1 recombinase RecA Machinery gene
  F6Y16_RS04050 (KUH180038_0743) cinA 783130..784281 (-) 1152 WP_000020361.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  F6Y16_RS04055 (KUH180038_0744) pgsA 784508..785086 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  F6Y16_RS04060 (KUH180038_0745) - 785120..785512 (-) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  F6Y16_RS04065 (KUH180038_0746) - 785531..786358 (-) 828 WP_000214890.1 YmfK family protein -
  F6Y16_RS04070 (KUH180038_0747) ymfI 786463..787167 (-) 705 WP_000646227.1 elongation factor P 5-aminopentanone reductase -
  F6Y16_RS04075 (KUH180038_0748) yfmH 787167..788453 (-) 1287 WP_000664766.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43267.55 Da        Isoelectric Point: 6.1914

>NTDB_id=63573 F6Y16_RS04050 WP_000020361.1 783130..784281(-) (cinA) [Staphylococcus aureus strain KUH180038]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=63573 F6Y16_RS04050 WP_000020361.1 783130..784281(-) (cinA) [Staphylococcus aureus strain KUH180038]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAACAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTTCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2XEJ4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431


Multiple sequence alignment