Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   PA1S_RS09775 Genome accession   NC_022808
Coordinates   2067957..2070686 (+) Length   909 a.a.
NCBI ID   WP_034065640.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa PA1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2062957..2075686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA1S_RS09755 (PA1S_09770) - 2063592..2064353 (+) 762 WP_003452681.1 class I SAM-dependent methyltransferase -
  PA1S_RS09760 (PA1S_09775) leuB 2064412..2065494 (+) 1083 WP_003091395.1 3-isopropylmalate dehydrogenase -
  PA1S_RS09765 (PA1S_09780) asd 2065564..2066676 (+) 1113 WP_003111187.1 aspartate-semialdehyde dehydrogenase -
  PA1S_RS09770 (PA1S_09785) - 2066778..2067788 (+) 1011 WP_003115016.1 aspartate-semialdehyde dehydrogenase -
  PA1S_RS09775 (PA1S_09790) fimV 2067957..2070686 (+) 2730 WP_034065640.1 motility hub landmark protein FimV Machinery gene
  PA1S_RS09780 (PA1S_09795) truA 2070708..2071565 (+) 858 WP_003091390.1 tRNA pseudouridine(38-40) synthase TruA -
  PA1S_RS09785 (PA1S_09800) - 2071655..2072290 (+) 636 WP_023517821.1 phosphoribosylanthranilate isomerase -
  PA1S_RS09790 (PA1S_09805) accD 2072559..2073431 (+) 873 WP_003104199.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  PA1S_RS09795 (PA1S_09810) folC 2073428..2074717 (+) 1290 WP_003104198.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  PA1S_RS09800 (PA1S_09815) - 2074721..2075386 (+) 666 WP_028681105.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 909 a.a.        Molecular weight: 96000.09 Da        Isoelectric Point: 3.9468

>NTDB_id=63572 PA1S_RS09775 WP_034065640.1 2067957..2070686(+) (fimV) [Pseudomonas aeruginosa PA1]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT
PAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVLLMILSRRNAQKEKEE
AQAFAADAGEEQEDALDLGKDGFDDLTLDEPEPQVAAAAPQVEKTTAQTSDALGEADIYIAYGRFNQAAELLQNAIYDEP
QRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELDSFSLDDLSLDD
SGHAAKPDAAGQDLDDAFDLSLDDLGGGDLGSDDVQADLKSDSGALDDLTLDSDLDLAASTAADKPVDDLDFGLDFAELA
ETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSLADEPTEPAAP
EKGEDSFAAQLDEVSAQLDELASNLDEPKSAAPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLARAYIDMGDSE
GARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2730 bp        

>NTDB_id=63572 PA1S_RS09775 WP_034065640.1 2067957..2070686(+) (fimV) [Pseudomonas aeruginosa PA1]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGTGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCTCCGGCTCCGGTGCGTACCACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAACTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAACCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGGAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGATAGCACTCGCCGCGAGAACGAAGAACTGCAGAGCCGCATGCAGGATCTGCAGAGCCAGTT
GGACAAGCTGCAGAAGTTGATCCAGTTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCAGCCGCGCAGGCGCCGGCTCAGCCCGGGACT
CCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCCCGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGCGCC
CGCTCCGGTACAGGCGGCAGAACAGCCGGCACCGAGCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGA
TCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTGCTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAA
GCCCAGGCTTTCGCCGCGGATGCCGGCGAGGAACAGGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGAC
CCTCGACGAGCCTGAACCGCAGGTCGCAGCCGCTGCGCCGCAGGTCGAGAAGACCACTGCGCAGACTTCCGATGCGCTGG
GCGAGGCCGACATCTATATCGCCTACGGGCGTTTCAACCAGGCCGCCGAACTGTTGCAGAACGCCATCTACGACGAGCCG
CAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAA
CGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGGTCGAGCAGCTCAAGTCGCGCTACCCGGCAATGGTCGCGGTCGCCG
CGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAGGACGAGCTGGATAGCTTCAGCCTCGACGACCTGTCGCTCGACGAC
AGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACAGGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGGCGG
CGGCGATCTTGGCAGCGACGACGTGCAGGCCGACCTCAAGTCCGACAGCGGGGCGCTGGACGACCTGACCCTGGACAGCG
ATCTGGACCTGGCGGCCTCGACCGCGGCGGACAAGCCTGTCGACGATCTCGACTTCGGCCTGGATTTCGCGGAGCTGGCA
GAGACTCCGAGCCAACCCAAGCATGACGACCTGGGCGATTTCTCCCTGGATCTCGATGCGCCGGAAGACAAGCTTTCGGA
CGACGACTTCCTGCTTTCGCTGAACGACGAGGTGCCCGCCGCGGCACCCGCCGACAACGAATTCACCCTCGATACCGAGG
CTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTGGCCGACGAGCCGACGGAGCCGGCCGCTCCG
GAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCAGTTGGACGAGTTGGCCAGCAACCTTGATGA
GCCGAAGAGCGCGGCGCCGAGTTTCTCCGCCGAGGATGCAGCGGTCGCCTCCGCCCTGGACGGAGACGCCGACGATGACT
TCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCTCGCGCCTACATCGACATGGGCGATAGCGAA
GGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCAGCAGGCGGAAGCCCGCGAGTTGCTGGAGCG
CCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

97.403

100

0.99

Multiple sequence alignment