Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LTQ54_RS13670 Genome accession   NZ_CP089203
Coordinates   2966668..2968056 (+) Length   462 a.a.
NCBI ID   WP_004734031.1    Uniprot ID   A0A0T7ERT3
Organism   Vibrio splendidus strain 2_C04b     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2961668..2973056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ54_RS13650 (LTQ54_13650) rsxB 2962073..2962666 (-) 594 WP_004734040.1 electron transport complex subunit RsxB -
  LTQ54_RS13655 (LTQ54_13655) rsxA 2962669..2963247 (-) 579 WP_102455388.1 electron transport complex subunit RsxA -
  LTQ54_RS13665 (LTQ54_13665) uvrB 2964335..2966365 (+) 2031 WP_108111430.1 excinuclease ABC subunit UvrB -
  LTQ54_RS13670 (LTQ54_13670) luxO 2966668..2968056 (+) 1389 WP_004734031.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  LTQ54_RS13675 (LTQ54_13675) luxU 2968081..2968425 (+) 345 WP_102556797.1 quorum-sensing phosphorelay protein LuxU -
  LTQ54_RS13680 (LTQ54_13680) - 2968516..2969403 (-) 888 WP_017092489.1 YvcK family protein -
  LTQ54_RS13685 (LTQ54_13685) moaA 2969739..2970728 (+) 990 WP_026012219.1 GTP 3',8-cyclase MoaA -
  LTQ54_RS13690 (LTQ54_13690) moaB 2971085..2971597 (+) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  LTQ54_RS13695 (LTQ54_13695) moaC 2971610..2972089 (+) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  LTQ54_RS13700 (LTQ54_13700) moaD 2972086..2972331 (+) 246 WP_004734025.1 molybdopterin synthase sulfur carrier subunit -
  LTQ54_RS13705 (LTQ54_13705) moaE 2972334..2972807 (+) 474 WP_102248946.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51762.31 Da        Isoelectric Point: 6.4047

>NTDB_id=635720 LTQ54_RS13670 WP_004734031.1 2966668..2968056(+) (luxO) [Vibrio splendidus strain 2_C04b]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=635720 LTQ54_RS13670 WP_004734031.1 2966668..2968056(+) (luxO) [Vibrio splendidus strain 2_C04b]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAGGATACCGCTTCGGTAGCAGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGTACTGGCCGCGATGCAATCGAGAGTTTGAATCATCGAA
TCCCAGACCTTATTTTATTAGATCTACGTCTGCCTGATATGACGGGTATGGACGTGCTATTTGCTGTAAAACAAAAATAC
CCTGAAGTTCCGGTTATCTTCATGACGGCTCACGGCTCTATCGATACTGCTGTAGAAGCGATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAACCGTGTGAAGCCGACCGACTCCGTATTACGGTGAACAACGCGATCCGCAAAGCCACCAAACTTAAAA
ACAGCTCGGAACATCCGGGAAACCAAAACTATCAAGGTTTCATTGGCAGTAGCCAAACCATGCAGCAGGTTTACCGAACT
ATCGACTCTGCAGCATCGAGTAAAGCCAGTATTTTCATCACGGGTGAAAGTGGTACCGGTAAAGAGGTATGTGCAGAAGC
TATTCATGCGGCGAGCAAGCGTGGTGACAAGCCTTTCATCGCGATTAACTGTGCGGCTATCCCTAAAGATCTAATTGAAA
GTGAGCTATTTGGCCACGTTAAAGGCGCCTTTACCGGTGCTGCAACTGATCGTCAAGGTGCCGCTGAACTTGCTGATGGC
GGAACACTATTCCTTGATGAATTGTGCGAAATGGACTTAGAGCTGCAAACCAAGCTGCTGCGCTTTATCCAAACCGGTAC
TTTTCAAAAAGTTGGCTCTTCGAAGATGAAGAGTGTCGATGTTCGTTTCGTATGTGCAACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCATTGCACCTGCCGCCATTGCGCGAG
CGCGGTGAAGATGTCATCGAGATTGCGTACTCGTTACTAGGCTACATGTCGGTTGAGGAAGGTAAGGCGTTTGTGCGTTT
TGCTCAGGAAGTGCTTGATCGCTTTAATCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTATTACGGAACG
TGGTGGTATTGAATAACGGCAAAGAGATTACTCTCAACATGCTTCCACCACCATTGAACCAACCGATTGAAAACAGCTTG
CGCTTGAAAGAGAAGCAGAACGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAGACGGCTATCGA
ACAGGCCATAAAAGCGTGTGACGGCAACATTCCCCGCGCGGCCGGTTTCTTAGATGTCAGTCCATCGACGATATACCGTA
AGTTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7ERT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37