Detailed information NTG0635701

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: LTQ54_RS10040
• Genome accession: NZ_CP089203
• Coordinates: 2205373..2206398 (+)
• Length: 341 a.a.
• NCBI ID: WP_243578739.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain 2_C04b
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2200373..2211398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LTQ54_RS10020 (LTQ54_10020)	-	2200704..2201432 (-)	729	WP_004729672.1	glutathione peroxidase	-
LTQ54_RS10025 (LTQ54_10025)	-	2201476..2201655 (-)	180	WP_017077611.1	hypothetical protein	-
LTQ54_RS10030 (LTQ54_10030)	oxyR	2201654..2202547 (+)	894	WP_017080198.1	DNA-binding transcriptional regulator OxyR	-
LTQ54_RS10035 (LTQ54_10035)	-	2202660..2205221 (-)	2562	WP_181360097.1	PBP1A family penicillin-binding protein	-
LTQ54_RS10040 (LTQ54_10040)	pilM	2205373..2206398 (+)	1026	WP_243578739.1	type IV pilus assembly protein PilM	Machinery gene
LTQ54_RS10045 (LTQ54_10045)	pilN	2206382..2206981 (+)	600	WP_102488973.1	PilN domain-containing protein	Machinery gene
LTQ54_RS10050 (LTQ54_10050)	pilO	2206974..2207603 (+)	630	WP_004729667.1	type 4a pilus biogenesis protein PilO	Machinery gene
LTQ54_RS10055 (LTQ54_10055)	pilP	2207590..2208108 (+)	519	WP_004729666.1	pilus assembly protein PilP	Machinery gene
LTQ54_RS10060 (LTQ54_10060)	pilQ	2208144..2209862 (+)	1719	WP_243578741.1	type IV pilus secretin PilQ family protein	Machinery gene
LTQ54_RS10065 (LTQ54_10065)	aroK	2210039..2210557 (+)	519	WP_004729664.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 38073.62 Da
• Isoelectric Point: 6.9111

>NTDB_id=635701 LTQ54_RS10040 WP_243578739.1 2205373..2206398(+) (pilM) [Vibrio splendidus strain 2_C04b]
MGSSLITGIDINHHSIKAVVLKPVGELYALVGYKELPISDDIFTANHTLEYQKTVKKLKELRKGLPFGCCNVAISVPDNT
VISKVLQIESELEDREKEFAIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGSTSSYQVYATRKEVVDSRADALTKAGFKP
VVVDTQAHGLLNIWQMASRLYPEKKNWLLVDVGIDQTSLGIIPQGLAPFYKDIAFGTKDLRNNGAASDIESVFATTEDTH
QFIVNLIEKLKRQLQLYSSGNAQQPISGIWLMGEGASIPMVTEELERQFQLSCESLNPLSLFENKVAKRRRLPTNWQHFG
IAAGMAMSGLKWQGEKHVASN

Nucleotide

• Length: 1026 bp

>NTDB_id=635701 LTQ54_RS10040 WP_243578739.1 2205373..2206398(+) (pilM) [Vibrio splendidus strain 2_C04b]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCATCACAGCATCAAAGCTGTGGTACTAAAACCCGTGGGGGAGTT
GTATGCCCTAGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACCATACTTTGGAGTATCAGAAAA
CTGTTAAGAAACTTAAAGAACTTAGGAAAGGGCTGCCTTTTGGCTGTTGCAACGTCGCCATTTCAGTACCTGATAACACG
GTGATCAGCAAAGTACTGCAAATAGAGAGTGAGTTAGAAGACAGAGAAAAGGAGTTTGCGATCTATCAAACCTTTGCTCA
TCAGTCTCCCTTTCCGATAGAGGAGCTGAGTTTAGATTTTGTAAAGCTGGAAGACAAACGATTTGGTAAAGGTTCGACAA
GCAGTTATCAGGTATACGCCACTCGTAAAGAAGTGGTGGATAGCCGAGCGGATGCTTTGACCAAAGCTGGTTTTAAACCT
GTGGTGGTAGACACGCAGGCGCATGGGTTGCTTAACATCTGGCAAATGGCATCGCGCCTGTACCCCGAAAAGAAAAACTG
GCTGCTGGTGGATGTGGGAATCGACCAAACGTCGTTAGGCATTATTCCACAAGGTTTGGCACCGTTTTATAAAGATATCG
CTTTTGGTACCAAAGATCTTCGCAACAATGGTGCTGCAAGTGATATCGAGAGTGTGTTCGCCACCACTGAAGATACACAT
CAATTTATTGTTAATTTGATTGAGAAGCTCAAGCGTCAATTACAGCTCTATTCATCAGGAAATGCACAGCAACCTATCTC
AGGGATCTGGCTGATGGGTGAGGGCGCCAGCATTCCTATGGTAACCGAAGAGCTAGAACGTCAATTTCAGTTGAGTTGCG
AGTCACTGAACCCTTTGTCTCTATTTGAGAATAAGGTGGCGAAGCGACGTCGATTACCAACGAACTGGCAACATTTCGGT
ATTGCGGCGGGTATGGCGATGAGTGGACTCAAGTGGCAGGGAGAAAAACATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (242-328)

• Type IV pilus assembly protein PilM; (PilM_2) (8-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	54.118	99.707	0.54
pilM	Vibrio campbellii strain DS40M4	48.246	100	0.484