Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LTQ03_RS11890 Genome accession   NZ_CP089201
Coordinates   2594760..2596148 (+) Length   462 a.a.
NCBI ID   WP_004734031.1    Uniprot ID   A0A0T7ERT3
Organism   Vibrio splendidus strain 1_C04a     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2589760..2601148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS11870 (LTQ03_11870) rsxB 2590165..2590758 (-) 594 WP_102394337.1 electron transport complex subunit RsxB -
  LTQ03_RS11875 (LTQ03_11875) rsxA 2590761..2591339 (-) 579 WP_004734039.1 electron transport complex subunit RsxA -
  LTQ03_RS11885 (LTQ03_11885) uvrB 2592427..2594457 (+) 2031 WP_243583370.1 excinuclease ABC subunit UvrB -
  LTQ03_RS11890 (LTQ03_11890) luxO 2594760..2596148 (+) 1389 WP_004734031.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  LTQ03_RS11895 (LTQ03_11895) luxU 2596173..2596517 (+) 345 WP_017063462.1 quorum-sensing phosphorelay protein LuxU -
  LTQ03_RS11900 (LTQ03_11900) - 2596608..2597495 (-) 888 WP_017063463.1 YvcK family protein -
  LTQ03_RS11905 (LTQ03_11905) moaA 2597831..2598820 (+) 990 WP_243583373.1 GTP 3',8-cyclase MoaA -
  LTQ03_RS11910 (LTQ03_11910) moaB 2598907..2599419 (+) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  LTQ03_RS11915 (LTQ03_11915) moaC 2599432..2599911 (+) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  LTQ03_RS11920 (LTQ03_11920) moaD 2599908..2600153 (+) 246 WP_017107315.1 molybdopterin synthase sulfur carrier subunit -
  LTQ03_RS11925 (LTQ03_11925) moaE 2600156..2600629 (+) 474 WP_017088565.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51762.31 Da        Isoelectric Point: 6.4047

>NTDB_id=635673 LTQ03_RS11890 WP_004734031.1 2594760..2596148(+) (luxO) [Vibrio splendidus strain 1_C04a]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=635673 LTQ03_RS11890 WP_004734031.1 2594760..2596148(+) (luxO) [Vibrio splendidus strain 1_C04a]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAGGATACCGCTTCGGTAGCAGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACTGGCCGCGATGCAATCGAGAGTTTGAATCATCGAA
TCCCAGACCTTATTTTATTAGATCTACGTCTGCCTGATATGACGGGTATGGACGTGCTATTTGCTGTAAAACAAAAATAC
CCTGAAGTTCCGGTTATCTTCATGACGGCTCACGGCTCTATCGATACTGCTGTAGAAGCGATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAACCGTGTGAAGCCGACCGACTCCGTATTACGGTGAACAACGCGATCCGCAAAGCCACCAAACTTAAAA
ACAGCTCGGAACACCCGGGAAACCAAAATTACCAAGGCTTTATTGGTAGCAGCCAAACCATGCAGCAGGTTTACCGAACT
ATCGACTCTGCAGCATCGAGTAAAGCCAGCATTTTCATCACGGGCGAAAGTGGTACGGGTAAAGAGGTATGTGCAGAAGC
CATTCATGCCGCCAGTAAGCGTGGAGATAAGCCGTTTATCGCGATTAACTGTGCCGCTATCCCTAAAGATCTGATTGAAA
GTGAGCTGTTTGGCCACGTTAAAGGTGCCTTTACCGGTGCTGCAACTGATCGTCAAGGTGCCGCTGAACTCGCTGATGGC
GGAACACTATTCCTTGATGAATTGTGCGAAATGGACTTAGAGCTGCAAACCAAGCTGCTGCGCTTTATCCAAACCGGTAC
TTTTCAAAAAGTTGGCTCTTCGAAGATGAAGAGTGTCGATGTTCGTTTCGTATGTGCAACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCATTGCACCTGCCGCCATTGCGCGAA
CGCGGTGAAGATGTCATCGAGATTGCGTACTCGTTACTAGGTTACATGTCGGTTGAGGAAGGTAAGGCGTTTGTGCGTTT
TGCTCAGGAAGTGCTTGATCGCTTTAATCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTATTACGGAACG
TGGTGGTATTGAATAACGGCAAAGAGATTACTCTCAACATGCTTCCGCCACCATTGAACCAACCGATTGAAAACAGCTTG
CGCTTGAAAGAGAAGCAGAACGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAGACGGCTATCGA
ACAGGCCATAAAAGCGTGTGACGGCAACATTCCCCGCGCGGCCGGTTTCTTAGATGTCAGTCCATCGACGATATACCGTA
AGTTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7ERT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37