Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LTK16_RS03190 Genome accession   NZ_CP089162
Coordinates   595104..595790 (+) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain UNC_SaCF11     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 590104..600790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTK16_RS03155 (LTK16_03155) yqeH 590631..591731 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  LTK16_RS03160 (LTK16_03160) aroE 591745..592551 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  LTK16_RS03165 (LTK16_03165) yhbY 592555..592845 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  LTK16_RS03170 (LTK16_03170) nadD 592848..593417 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LTK16_RS03175 (LTK16_03175) yqeK 593407..593991 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LTK16_RS03180 (LTK16_03180) rsfS 593992..594345 (+) 354 WP_001088022.1 ribosome silencing factor -
  LTK16_RS03185 (LTK16_03185) - 594348..595064 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  LTK16_RS03190 (LTK16_03190) comEA 595104..595790 (+) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  LTK16_RS03195 (LTK16_03195) - 595882..596343 (+) 462 WP_000439693.1 ComE operon protein 2 -
  LTK16_RS03200 (LTK16_03200) comEC 596348..598549 (+) 2202 WP_001548978.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LTK16_RS03205 (LTK16_03205) holA 598606..599580 (+) 975 WP_232043886.1 DNA polymerase III subunit delta -
  LTK16_RS03210 (LTK16_03210) rpsT 599625..599876 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=635564 LTK16_RS03190 WP_001792568.1 595104..595790(+) (comEA) [Staphylococcus aureus strain UNC_SaCF11]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=635564 LTK16_RS03190 WP_001792568.1 595104..595790(+) (comEA) [Staphylococcus aureus strain UNC_SaCF11]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969