Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LTK17_RS01860 Genome accession   NZ_CP089157
Coordinates   396009..396995 (-) Length   328 a.a.
NCBI ID   WP_000959276.1    Uniprot ID   A0AAJ4YXL4
Organism   Staphylococcus aureus strain UNC_SaCF30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 391009..401995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTK17_RS01835 (LTK17_01835) - 391269..391616 (-) 348 WP_001242102.1 hypothetical protein -
  LTK17_RS01840 (LTK17_01840) - 391802..392395 (+) 594 WP_000224620.1 CYTH domain-containing protein -
  LTK17_RS01845 (LTK17_01845) - 392499..392864 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  LTK17_RS01850 (LTK17_01850) yjbH 392887..393693 (+) 807 WP_000896691.1 protease adaptor protein YjbH -
  LTK17_RS01855 (LTK17_01855) pepF 394153..395961 (-) 1809 WP_000082722.1 oligoendopeptidase F -
  LTK17_RS01860 (LTK17_01860) coiA 396009..396995 (-) 987 WP_000959276.1 competence protein CoiA Machinery gene
  LTK17_RS01865 (LTK17_01865) mecA 397116..397835 (-) 720 WP_001217735.1 adaptor protein MecA -
  LTK17_RS01870 (LTK17_01870) spxA 398206..398601 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  LTK17_RS01875 (LTK17_01875) trpS 398896..399885 (+) 990 WP_000448933.1 tryptophan--tRNA ligase -
  LTK17_RS01880 (LTK17_01880) - 399912..401558 (-) 1647 WP_232043809.1 IS1182-like element ISSau3 family transposase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38741.30 Da        Isoelectric Point: 9.6486

>NTDB_id=635431 LTK17_RS01860 WP_000959276.1 396009..396995(-) (coiA) [Staphylococcus aureus strain UNC_SaCF30]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIIMFQQIQYLGGHKYVAEKKNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDHEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=635431 LTK17_RS01860 WP_000959276.1 396009..396995(-) (coiA) [Staphylococcus aureus strain UNC_SaCF30]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACACTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATTATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAAGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCACGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.951

100

0.97
  coiA Staphylococcus aureus N315

96.951

100

0.97